Hb_007590_010

Information

Type -
Description -
Location Contig7590: 3221-7367
Sequence    

Annotation

kegg
ID rcu:RCOM_0612080
description ubiquitin-protein ligase, putative
nr
ID XP_002525634.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID B9SI15
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0612080 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring u-box superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57163: 3261-4823 , PASA_asmbl_57164: 5111-7319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000099_240 0.0637990191 - - 60S ribosomal protein L7a, putative [Ricinus communis]
3 Hb_001358_030 0.0714867346 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
4 Hb_005333_070 0.0732988462 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001226_160 0.0775689765 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
6 Hb_000923_020 0.0793469073 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
7 Hb_168000_010 0.0807410866 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
8 Hb_181235_010 0.0817317511 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
9 Hb_000780_060 0.0841032743 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
10 Hb_001301_160 0.0887605192 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
11 Hb_002660_080 0.0890995392 - - 60S ribosomal protein L12A [Hevea brasiliensis]
12 Hb_003376_320 0.0900047109 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_000300_060 0.0907950605 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
14 Hb_002375_020 0.0917824322 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
15 Hb_000032_290 0.0928387217 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
16 Hb_000406_220 0.0930624698 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
17 Hb_000343_160 0.0944329204 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
18 Hb_003615_010 0.0945103705 - - 60S ribosomal protein L8, putative [Ricinus communis]
19 Hb_003777_330 0.0948559885 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
20 Hb_001677_210 0.0964556224 - - hypothetical protein JCGZ_01374 [Jatropha curcas]

Gene co-expression network

sample Hb_007590_010 Hb_007590_010 Hb_000099_240 Hb_000099_240 Hb_007590_010--Hb_000099_240 Hb_001358_030 Hb_001358_030 Hb_007590_010--Hb_001358_030 Hb_005333_070 Hb_005333_070 Hb_007590_010--Hb_005333_070 Hb_001226_160 Hb_001226_160 Hb_007590_010--Hb_001226_160 Hb_000923_020 Hb_000923_020 Hb_007590_010--Hb_000923_020 Hb_168000_010 Hb_168000_010 Hb_007590_010--Hb_168000_010 Hb_000099_240--Hb_000923_020 Hb_004223_090 Hb_004223_090 Hb_000099_240--Hb_004223_090 Hb_000099_240--Hb_001358_030 Hb_003777_270 Hb_003777_270 Hb_000099_240--Hb_003777_270 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_005333_070--Hb_001358_030 Hb_000245_130 Hb_000245_130 Hb_005333_070--Hb_000245_130 Hb_003929_250 Hb_003929_250 Hb_005333_070--Hb_003929_250 Hb_005333_070--Hb_012008_020 Hb_005333_070--Hb_001226_160 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_001226_160--Hb_002660_080 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_000057_040 Hb_000057_040 Hb_168000_010--Hb_000057_040 Hb_000395_170 Hb_000395_170 Hb_168000_010--Hb_000395_170 Hb_003175_010 Hb_003175_010 Hb_168000_010--Hb_003175_010 Hb_002609_110 Hb_002609_110 Hb_168000_010--Hb_002609_110 Hb_007317_210 Hb_007317_210 Hb_168000_010--Hb_007317_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9663 11.0108 5.69848 8.51829 16.6581 22.4007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3713 22.6255 14.422 9.52828 2.6373

CAGE analysis