Hb_000057_040

Information

Type -
Description -
Location Contig57: 116716-131081
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49286: 125371-130994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002609_110 0.0571085624 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
3 Hb_168707_030 0.0579902289 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
4 Hb_168000_010 0.0620575859 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
5 Hb_003642_060 0.0687280464 - - hypothetical protein RCOM_1189860 [Ricinus communis]
6 Hb_004195_160 0.0692886208 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
7 Hb_001252_080 0.0730360924 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
8 Hb_000099_240 0.0781513097 - - 60S ribosomal protein L7a, putative [Ricinus communis]
9 Hb_012193_010 0.0811908486 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000749_150 0.0820637816 - - -
11 Hb_001030_120 0.083354352 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_185467_020 0.0849023446 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_002811_360 0.0852263455 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
14 Hb_007426_230 0.0856843934 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
15 Hb_000321_070 0.0860711374 - - protein with unknown function [Ricinus communis]
16 Hb_039837_010 0.0867132489 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
17 Hb_000395_170 0.0871081431 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
18 Hb_001006_170 0.0871806835 - - Endonuclease V, putative [Ricinus communis]
19 Hb_009111_050 0.0877620568 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
20 Hb_002149_020 0.0878288108 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000057_040 Hb_000057_040 Hb_002609_110 Hb_002609_110 Hb_000057_040--Hb_002609_110 Hb_168707_030 Hb_168707_030 Hb_000057_040--Hb_168707_030 Hb_168000_010 Hb_168000_010 Hb_000057_040--Hb_168000_010 Hb_003642_060 Hb_003642_060 Hb_000057_040--Hb_003642_060 Hb_004195_160 Hb_004195_160 Hb_000057_040--Hb_004195_160 Hb_001252_080 Hb_001252_080 Hb_000057_040--Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_168707_030--Hb_003642_060 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_001439_150 Hb_001439_150 Hb_168707_030--Hb_001439_150 Hb_000000_080 Hb_000000_080 Hb_168707_030--Hb_000000_080 Hb_168707_030--Hb_004195_160 Hb_000395_170 Hb_000395_170 Hb_168000_010--Hb_000395_170 Hb_003175_010 Hb_003175_010 Hb_168000_010--Hb_003175_010 Hb_007590_010 Hb_007590_010 Hb_168000_010--Hb_007590_010 Hb_168000_010--Hb_002609_110 Hb_007317_210 Hb_007317_210 Hb_168000_010--Hb_007317_210 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_003642_060--Hb_004195_160 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_000358_150 Hb_000358_150 Hb_001252_080--Hb_000358_150 Hb_000676_110 Hb_000676_110 Hb_001252_080--Hb_000676_110 Hb_001369_420 Hb_001369_420 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4008 6.81355 5.63227 7.00532 21.2223 25.8661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0778 17.755 17.7229 9.39621 3.68529

CAGE analysis