Hb_001252_080

Information

Type -
Description -
Location Contig1252: 73740-77638
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20650g
description POPTRDRAFT_659628; eukaryotic translation initiation factor 3G family protein
nr
ID XP_012092967.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
swissprot
ID Q28CY2
description Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1
trembl
ID A0A067JKS8
description Eukaryotic translation initiation factor 3 subunit G OS=Jatropha curcas GN=JCGZ_05858 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit g-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07717: 73772-77637 , PASA_asmbl_07718: 77048-77165 , PASA_asmbl_07719: 73772-81828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_080 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
2 Hb_000358_150 0.0575412466 - - hypothetical protein VITISV_012309 [Vitis vinifera]
3 Hb_002609_110 0.0605246603 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
4 Hb_000676_110 0.0716478258 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
5 Hb_000057_040 0.0730360924 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001369_420 0.0753583459 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
7 Hb_000207_390 0.0765837198 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
8 Hb_004724_200 0.078943157 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
9 Hb_000152_820 0.079388857 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
10 Hb_002149_020 0.0802963729 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
11 Hb_000418_100 0.0818447884 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
12 Hb_000062_240 0.0829122549 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
13 Hb_000103_180 0.0829275768 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
14 Hb_002811_360 0.0833622897 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
15 Hb_023344_030 0.0846363176 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_009838_100 0.0855606674 - - hypothetical protein RCOM_1217340 [Ricinus communis]
17 Hb_002154_030 0.0857037535 - - RNA binding protein, putative [Ricinus communis]
18 Hb_004600_040 0.0864649818 - - -
19 Hb_008695_180 0.0870335365 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_000815_210 0.0882765207 - - uncoupling protein 3, partial [Manihot esculenta]

Gene co-expression network

sample Hb_001252_080 Hb_001252_080 Hb_000358_150 Hb_000358_150 Hb_001252_080--Hb_000358_150 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_000676_110 Hb_000676_110 Hb_001252_080--Hb_000676_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001369_420 Hb_001369_420 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_000358_150--Hb_001369_420 Hb_000358_150--Hb_000676_110 Hb_001493_030 Hb_001493_030 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000051_070 Hb_000051_070 Hb_000358_150--Hb_000051_070 Hb_002609_110--Hb_000057_040 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_000676_110--Hb_001369_420 Hb_008695_180 Hb_008695_180 Hb_000676_110--Hb_008695_180 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_000676_110--Hb_001493_030 Hb_168707_030 Hb_168707_030 Hb_000057_040--Hb_168707_030 Hb_168000_010 Hb_168000_010 Hb_000057_040--Hb_168000_010 Hb_003642_060 Hb_003642_060 Hb_000057_040--Hb_003642_060 Hb_000057_040--Hb_004195_160 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_001369_420--Hb_008695_180 Hb_001369_420--Hb_000051_070 Hb_001369_420--Hb_001493_030 Hb_007163_090 Hb_007163_090 Hb_000207_390--Hb_007163_090 Hb_001797_050 Hb_001797_050 Hb_000207_390--Hb_001797_050 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_001301_200 Hb_001301_200 Hb_000207_390--Hb_001301_200 Hb_000803_190 Hb_000803_190 Hb_000207_390--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.272 40.8581 28.3101 43.2342 132.751 114.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.2939 76.2454 105.112 63.7168 27.3052

CAGE analysis