Hb_000676_110

Information

Type -
Description -
Location Contig676: 58783-69475
Sequence    

Annotation

kegg
ID pmum:103340143
description uncharacterized LOC103340143
nr
ID XP_006383154.1
description glycosyl transferase family 1 family protein [Populus trichocarpa]
swissprot
ID Q81ST7
description N-acetyl-alpha-D-glucosaminyl L-malate synthase OS=Bacillus anthracis GN=bshA PE=1 SV=1
trembl
ID B9MXK7
description Glycosyl transferase family 1 family protein OS=Populus trichocarpa GN=POPTR_0005s12080g PE=4 SV=1
Gene Ontology
ID GO:0016757
description glycosyl transferase family 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53546: 58741-69323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_110 0.0 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
2 Hb_001369_420 0.0685616936 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
3 Hb_000358_150 0.0702743357 - - hypothetical protein VITISV_012309 [Vitis vinifera]
4 Hb_001252_080 0.0716478258 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
5 Hb_008695_180 0.0717567219 - - eukaryotic translation initiation factor [Hevea brasiliensis]
6 Hb_001143_160 0.0731725873 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
7 Hb_001493_030 0.074346178 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
8 Hb_007101_170 0.0757258183 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
9 Hb_000152_380 0.0759248376 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
10 Hb_000051_070 0.0766640059 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_003058_190 0.0775854901 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
12 Hb_089032_040 0.0776164981 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
13 Hb_001790_020 0.0784749804 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
14 Hb_023344_030 0.0805662142 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
15 Hb_006827_020 0.0813628488 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000123_210 0.0831430985 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
17 Hb_005731_130 0.083344284 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
18 Hb_002025_020 0.0845004776 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
19 Hb_000061_460 0.0848593921 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
20 Hb_005065_010 0.0853871635 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]

Gene co-expression network

sample Hb_000676_110 Hb_000676_110 Hb_001369_420 Hb_001369_420 Hb_000676_110--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_008695_180 Hb_008695_180 Hb_000676_110--Hb_008695_180 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_001493_030 Hb_001493_030 Hb_000676_110--Hb_001493_030 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_001369_420--Hb_008695_180 Hb_000051_070 Hb_000051_070 Hb_001369_420--Hb_000051_070 Hb_001369_420--Hb_000358_150 Hb_001369_420--Hb_001493_030 Hb_000358_150--Hb_001252_080 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000358_150--Hb_000051_070 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_002876_110 Hb_002876_110 Hb_008695_180--Hb_002876_110 Hb_002200_080 Hb_002200_080 Hb_008695_180--Hb_002200_080 Hb_089032_040 Hb_089032_040 Hb_008695_180--Hb_089032_040 Hb_008695_180--Hb_000051_070 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5113 11.5652 6.16124 10.719 24.94 16.8932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5397 14.768 19.7109 14.4041 6.85883

CAGE analysis