Hb_000803_190

Information

Type -
Description -
Location Contig803: 243667-247587
Sequence    

Annotation

kegg
ID rcu:RCOM_1578940
description thump domain protein, putative
nr
ID XP_012090052.1
description PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9VZD8
description THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG15014 PE=1 SV=2
trembl
ID A0A067JRH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25960 PE=4 SV=1
Gene Ontology
ID GO:0005829
description thump domain-containing protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_190 0.0 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_004734_060 0.0572501254 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
3 Hb_033152_080 0.058907763 - - RNA-binding protein Nova-1, putative [Ricinus communis]
4 Hb_000953_010 0.0609227786 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
5 Hb_001797_050 0.0622104589 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
6 Hb_005188_050 0.0684922596 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000207_390 0.0701469814 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
8 Hb_000062_240 0.0711977319 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
9 Hb_181235_010 0.0727966678 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
10 Hb_004934_090 0.0729330116 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
11 Hb_007163_090 0.0750455182 - - PREDICTED: protein spt2-like [Jatropha curcas]
12 Hb_002154_030 0.075534975 - - RNA binding protein, putative [Ricinus communis]
13 Hb_000487_290 0.075823087 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
14 Hb_003994_240 0.0766090024 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
15 Hb_008085_010 0.0771262162 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
16 Hb_009620_040 0.0785857019 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
17 Hb_005532_050 0.0789326068 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_004837_040 0.079075328 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
19 Hb_002030_030 0.0795462203 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
20 Hb_004204_080 0.0796355911 - - diacylglycerol kinase, theta, putative [Ricinus communis]

Gene co-expression network

sample Hb_000803_190 Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_004734_060--Hb_033152_080 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130 Hb_033152_080--Hb_000209_020 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000827_070 Hb_000827_070 Hb_005188_050--Hb_000827_070 Hb_000487_290 Hb_000487_290 Hb_005188_050--Hb_000487_290 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_000207_390--Hb_007163_090 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_001301_200 Hb_001301_200 Hb_000207_390--Hb_001301_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1324 32.2124 12.5487 10.9688 41.2312 59.2195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.678 27.4968 37.588 23.82 11.2759

CAGE analysis