Hb_000808_180

Information

Type -
Description -
Location Contig808: 181656-187743
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01930g
description hypothetical protein
nr
ID XP_012088918.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
swissprot
ID O80488
description Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
trembl
ID B9N4P9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01930g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59094: 182354-182731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_180 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
2 Hb_033152_080 0.0777184737 - - RNA-binding protein Nova-1, putative [Ricinus communis]
3 Hb_001516_100 0.0828951924 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_001366_040 0.0838641059 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
5 Hb_002798_040 0.0914648192 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
6 Hb_004734_060 0.092084192 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
7 Hb_002960_060 0.0922654703 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
8 Hb_000209_020 0.0940103464 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
9 Hb_007364_010 0.0943283286 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
10 Hb_004452_100 0.0943450063 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
11 Hb_000284_210 0.0964101825 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002026_110 0.0974053572 - - protein binding protein, putative [Ricinus communis]
13 Hb_001584_170 0.0977609754 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_001274_020 0.0985226262 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
15 Hb_000184_130 0.0985291044 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
16 Hb_001141_330 0.0991154003 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
17 Hb_001789_210 0.1033116394 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
18 Hb_002039_010 0.1041263757 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_000172_550 0.1041894464 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
20 Hb_000703_080 0.1045637385 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]

Gene co-expression network

sample Hb_000808_180 Hb_000808_180 Hb_033152_080 Hb_033152_080 Hb_000808_180--Hb_033152_080 Hb_001516_100 Hb_001516_100 Hb_000808_180--Hb_001516_100 Hb_001366_040 Hb_001366_040 Hb_000808_180--Hb_001366_040 Hb_002798_040 Hb_002798_040 Hb_000808_180--Hb_002798_040 Hb_004734_060 Hb_004734_060 Hb_000808_180--Hb_004734_060 Hb_002960_060 Hb_002960_060 Hb_000808_180--Hb_002960_060 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_033152_080--Hb_000953_010 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_001516_100--Hb_004734_060 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_001516_100--Hb_033152_080 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001504_160 Hb_001504_160 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_002798_040--Hb_004452_100 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_004734_060--Hb_000184_130 Hb_000029_160 Hb_000029_160 Hb_002960_060--Hb_000029_160 Hb_001975_070 Hb_001975_070 Hb_002960_060--Hb_001975_070 Hb_005147_110 Hb_005147_110 Hb_002960_060--Hb_005147_110 Hb_002169_010 Hb_002169_010 Hb_002960_060--Hb_002169_010 Hb_004310_060 Hb_004310_060 Hb_002960_060--Hb_004310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59741 2.89738 0.318332 0.42041 3.75672 4.50146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6715 1.8684 2.54065 1.9606 1.02567

CAGE analysis