Hb_000100_070

Information

Type -
Description -
Location Contig100: 161771-165090
Sequence    

Annotation

kegg
ID rcu:RCOM_1553780
description Pre-mRNA-splicing factor isy-1, putative
nr
ID XP_012081362.1
description PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
swissprot
ID Q6AYB3
description Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus GN=Isy1 PE=2 SV=1
trembl
ID A0A067KDQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18756 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pre-mrna-splicing factor isy1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00201: 161796-165232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_070 0.0 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
2 Hb_108216_040 0.0549441553 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
3 Hb_002798_040 0.0640944096 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_007590_080 0.0678055631 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
5 Hb_002400_180 0.0710074232 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000640_320 0.0728397576 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
7 Hb_002007_350 0.0751393531 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
8 Hb_007632_020 0.078330099 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
9 Hb_001235_200 0.0804470887 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000184_110 0.0808024335 - - hypothetical protein F383_18769 [Gossypium arboreum]
11 Hb_004678_060 0.0814348318 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_009265_080 0.0828019997 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_000789_080 0.0832248342 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
14 Hb_000803_300 0.0849839899 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_000002_040 0.0853668282 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
16 Hb_003020_110 0.085979767 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_004934_090 0.0863418052 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
18 Hb_003581_120 0.0875993319 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
19 Hb_026099_010 0.0887725088 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
20 Hb_008253_010 0.0892812107 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_070 Hb_000100_070 Hb_108216_040 Hb_108216_040 Hb_000100_070--Hb_108216_040 Hb_002798_040 Hb_002798_040 Hb_000100_070--Hb_002798_040 Hb_007590_080 Hb_007590_080 Hb_000100_070--Hb_007590_080 Hb_002400_180 Hb_002400_180 Hb_000100_070--Hb_002400_180 Hb_000640_320 Hb_000640_320 Hb_000100_070--Hb_000640_320 Hb_002007_350 Hb_002007_350 Hb_000100_070--Hb_002007_350 Hb_108216_040--Hb_000640_320 Hb_008143_030 Hb_008143_030 Hb_108216_040--Hb_008143_030 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_108216_040--Hb_002400_180 Hb_004452_100 Hb_004452_100 Hb_002798_040--Hb_004452_100 Hb_001366_040 Hb_001366_040 Hb_002798_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_007336_020 Hb_007336_020 Hb_007590_080--Hb_007336_020 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_002043_170 Hb_002043_170 Hb_000640_320--Hb_002043_170 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_009265_080 Hb_009265_080 Hb_002007_350--Hb_009265_080 Hb_002007_350--Hb_008253_010 Hb_002007_350--Hb_004678_060 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.6434 37.9617 18.2246 18.017 67.605 66.8211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.8984 31.1725 36.9888 30.8702 31.6507

CAGE analysis