Hb_004678_060

Information

Type transcription factor
Description TF Family: FAR1
Location Contig4678: 60547-72500
Sequence    

Annotation

kegg
ID rcu:RCOM_0452700
description hypothetical protein
nr
ID XP_012065183.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067L617
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20862 PE=4 SV=1
Gene Ontology
ID GO:0006301
description far-red impaired responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44141: 61174-64917 , PASA_asmbl_44143: 69610-69864 , PASA_asmbl_44144: 72486-73790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_060 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
2 Hb_002400_180 0.0533848016 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003656_160 0.0550721124 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
4 Hb_009265_080 0.0551469786 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_008253_010 0.0579652828 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_002007_350 0.0610067665 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
7 Hb_003006_060 0.06615964 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
8 Hb_001226_180 0.0676720901 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
9 Hb_000343_210 0.0697301681 - - ran-binding protein, putative [Ricinus communis]
10 Hb_000789_080 0.0704769857 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
11 Hb_007590_080 0.0709058011 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
12 Hb_000322_100 0.0718964764 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
13 Hb_003581_120 0.0735911543 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
14 Hb_000640_320 0.0741008733 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
15 Hb_001969_040 0.076742546 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
16 Hb_000034_050 0.076743034 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
17 Hb_000104_080 0.0771058981 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
18 Hb_000531_090 0.0773553278 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
19 Hb_001616_090 0.0782566668 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
20 Hb_011942_080 0.0788103228 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]

Gene co-expression network

sample Hb_004678_060 Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_004678_060--Hb_002400_180 Hb_003656_160 Hb_003656_160 Hb_004678_060--Hb_003656_160 Hb_009265_080 Hb_009265_080 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_002301_220 Hb_002301_220 Hb_003656_160--Hb_002301_220 Hb_000343_210 Hb_000343_210 Hb_003656_160--Hb_000343_210 Hb_046615_020 Hb_046615_020 Hb_003656_160--Hb_046615_020 Hb_003656_160--Hb_002007_350 Hb_003656_160--Hb_002400_180 Hb_009265_080--Hb_002007_350 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_002400_180 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_008253_010--Hb_002007_350 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010 Hb_002007_350--Hb_007590_080 Hb_002007_350--Hb_000803_300 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_003006_060--Hb_009265_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.7292 17.4903 13.5269 10.8878 34.989 41.4392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5379 14.4589 16.5673 11.8512 9.32899

CAGE analysis