Hb_033152_080

Information

Type -
Description -
Location Contig33152: 70550-76696
Sequence    

Annotation

kegg
ID rcu:RCOM_0774000
description RNA-binding protein Nova-1, putative (EC:3.1.2.15)
nr
ID XP_002521836.1
description RNA-binding protein Nova-1, putative [Ricinus communis]
swissprot
ID Q91WJ8
description Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1
trembl
ID B9S767
description RNA-binding protein Nova-1, putative OS=Ricinus communis GN=RCOM_0774000 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34855: 70591-76734 , PASA_asmbl_34856: 70625-76376 , PASA_asmbl_34857: 70625-75045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_080 0.0 - - RNA-binding protein Nova-1, putative [Ricinus communis]
2 Hb_004734_060 0.0452658442 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
3 Hb_000803_190 0.058907763 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_000953_010 0.0749830836 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
5 Hb_000808_180 0.0777184737 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
6 Hb_000184_130 0.0797757678 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
7 Hb_000209_020 0.081900397 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
8 Hb_000059_210 0.0835097893 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001366_040 0.0840886399 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
10 Hb_003994_240 0.0841746748 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
11 Hb_000011_080 0.0849038142 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
12 Hb_004055_040 0.0855071689 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
13 Hb_005324_010 0.0856792909 - - Chaperone protein dnaJ, putative [Ricinus communis]
14 Hb_010080_060 0.0867702315 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_003728_030 0.0873029266 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
16 Hb_001516_100 0.0879070709 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000386_030 0.0887941247 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
18 Hb_004934_090 0.0890860062 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
19 Hb_001584_170 0.08983328 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_001663_030 0.0906206133 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_033152_080 Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_004734_060--Hb_000184_130 Hb_000803_190--Hb_000953_010 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_000808_180--Hb_001516_100 Hb_001366_040 Hb_001366_040 Hb_000808_180--Hb_001366_040 Hb_002798_040 Hb_002798_040 Hb_000808_180--Hb_002798_040 Hb_000808_180--Hb_004734_060 Hb_002960_060 Hb_002960_060 Hb_000808_180--Hb_002960_060 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_000209_020--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000209_020--Hb_005324_010 Hb_000139_240 Hb_000139_240 Hb_000209_020--Hb_000139_240 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5164 35.5392 7.7909 8.53041 42.8989 56.0266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6092 20.6859 33.4933 26.8602 9.92005

CAGE analysis