Hb_000139_240

Information

Type -
Description -
Location Contig139: 266150-267308
Sequence    

Annotation

kegg
ID rcu:RCOM_0913810
description hypothetical protein
nr
ID XP_012069572.1
description PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
swissprot
ID Q9LU24
description Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=3 SV=1
trembl
ID B9RTY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0913810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_240 0.0 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
2 Hb_000209_020 0.0887592295 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
3 Hb_005324_010 0.0993141887 - - Chaperone protein dnaJ, putative [Ricinus communis]
4 Hb_005306_130 0.1001695887 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_002270_010 0.1176883841 - - Chaperone protein dnaJ, putative [Ricinus communis]
6 Hb_000011_080 0.1226377374 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
7 Hb_004734_060 0.1247519761 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_015401_020 0.1254841446 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_001274_020 0.1266959319 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
10 Hb_000920_040 0.128713305 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
11 Hb_000116_480 0.1292245899 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
12 Hb_003299_090 0.1309099765 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
13 Hb_004310_050 0.1341165591 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
14 Hb_033152_080 0.1359454592 - - RNA-binding protein Nova-1, putative [Ricinus communis]
15 Hb_002248_140 0.1371517481 - - acetylglucosaminyltransferase, putative [Ricinus communis]
16 Hb_002493_100 0.1384176584 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
17 Hb_000184_130 0.1392920222 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_001817_180 0.139646794 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
19 Hb_001975_070 0.1402301735 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
20 Hb_001655_070 0.1402886429 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_240 Hb_000139_240 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_005324_010 Hb_005324_010 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060 Hb_000209_020--Hb_004734_060 Hb_000184_130 Hb_000184_130 Hb_000209_020--Hb_000184_130 Hb_000209_020--Hb_005324_010 Hb_033152_080 Hb_033152_080 Hb_000209_020--Hb_033152_080 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010 Hb_005324_010--Hb_005306_130 Hb_005324_010--Hb_004734_060 Hb_000953_010 Hb_000953_010 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_005324_010--Hb_033152_080 Hb_005306_130--Hb_004734_060 Hb_005306_130--Hb_033152_080 Hb_005306_130--Hb_000209_020 Hb_000059_210 Hb_000059_210 Hb_005306_130--Hb_000059_210 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_001771_130 Hb_001771_130 Hb_000011_080--Hb_001771_130 Hb_000011_080--Hb_033152_080 Hb_000230_080 Hb_000230_080 Hb_000011_080--Hb_000230_080 Hb_000011_080--Hb_004734_060 Hb_000173_400 Hb_000173_400 Hb_000011_080--Hb_000173_400 Hb_000011_080--Hb_005324_010 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_004734_060--Hb_000184_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90799 2.88166 0.110171 0.936295 2.65638 4.80408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09828 1.54997 2.36097 2.243 0.100806

CAGE analysis