Hb_000172_550

Information

Type transcription factor
Description TF Family: bZIP
Location Contig172: 614223-628688
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06180g
description POPTRDRAFT_1082653; TGA-type basic leucine zipper protein TGA1.1
nr
ID XP_012075186.1
description PREDICTED: transcription factor TGA1-like [Jatropha curcas]
swissprot
ID Q39237
description Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2
trembl
ID A0A067KGJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09366 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16189: 614143-615378 , PASA_asmbl_16190: 616296-616453 , PASA_asmbl_16191: 616593-617280 , PASA_asmbl_16192: 623919-628324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_550 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
2 Hb_000029_160 0.0761871136 - - Nitrilase, putative [Ricinus communis]
3 Hb_000076_290 0.0779862804 - - translation factor sui1, putative [Ricinus communis]
4 Hb_004032_350 0.0790322686 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
5 Hb_002725_070 0.0817461307 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
6 Hb_002820_040 0.0839963438 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005295_040 0.0842706535 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
8 Hb_002270_010 0.0845371973 - - Chaperone protein dnaJ, putative [Ricinus communis]
9 Hb_004724_360 0.0862632331 - - OTU-like cysteine protease family protein [Populus trichocarpa]
10 Hb_002133_030 0.0877006418 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
11 Hb_027405_020 0.0878641754 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
12 Hb_000078_100 0.0897949226 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
13 Hb_001829_010 0.0901784622 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
14 Hb_042083_070 0.0903697285 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_000327_310 0.0907519542 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
16 Hb_001009_050 0.0911231632 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
17 Hb_002078_420 0.0932474649 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
18 Hb_001975_070 0.0935480485 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
19 Hb_000735_120 0.0938849449 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
20 Hb_000001_180 0.0939428867 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_550 Hb_000172_550 Hb_000029_160 Hb_000029_160 Hb_000172_550--Hb_000029_160 Hb_000076_290 Hb_000076_290 Hb_000172_550--Hb_000076_290 Hb_004032_350 Hb_004032_350 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_000172_550--Hb_005295_040 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_000318_140 Hb_000318_140 Hb_002820_040--Hb_000318_140 Hb_006913_040 Hb_006913_040 Hb_002820_040--Hb_006913_040 Hb_002820_040--Hb_000078_100 Hb_007416_310 Hb_007416_310 Hb_002820_040--Hb_007416_310 Hb_000645_150 Hb_000645_150 Hb_002820_040--Hb_000645_150 Hb_004724_360 Hb_004724_360 Hb_005295_040--Hb_004724_360 Hb_001975_020 Hb_001975_020 Hb_005295_040--Hb_001975_020 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_000327_310 Hb_000327_310 Hb_005295_040--Hb_000327_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.6774 37.8144 4.98175 11.5026 64.4802 65.7592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.4278 19.1633 20.6976 19.8783 8.29472

CAGE analysis