Hb_005306_130

Information

Type -
Description -
Location Contig5306: 86511-89747
Sequence    

Annotation

kegg
ID rcu:RCOM_0654950
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002521376.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q40465
description Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9S5V7
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0654950 PE=3 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic initiation factor 4a-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47365: 87465-89782 , PASA_asmbl_47367: 88318-88568
cDNA
(Sanger)
(ID:Location)		 006_P15.ab1: 87246-89804 , 009_G13.ab1: 87281-89804 , 010_A17.ab1: 87233-89803 , 012_E15.ab1: 87233-89814 , 018_M09.ab1: 87303-89804 , 018_P17.ab1: 87276-89804 , 020_A07.ab1: 87247-89804 , 022_L22.ab1: 87312-89801 , 033_L05.ab1: 87262-89804 , 034_K21.ab1: 87264-89804 , 039_A21.ab1: 87647-89743 , 048_K18.ab1: 87233-89804 , 049_A13.ab1: 87276-89804 , 052_O22.ab1: 87234-89804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_130 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_005324_010 0.0710334174 - - Chaperone protein dnaJ, putative [Ricinus communis]
3 Hb_004734_060 0.0884725046 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_033152_080 0.0991606603 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_000209_020 0.0992567935 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
6 Hb_000139_240 0.1001695887 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
7 Hb_000059_210 0.1005095306 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000237_080 0.1041153964 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
9 Hb_000011_080 0.1051306021 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
10 Hb_093084_060 0.1058058743 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
11 Hb_001655_070 0.1080647414 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
12 Hb_012807_050 0.1093792435 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_000953_010 0.1111617585 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
14 Hb_001584_160 0.111807542 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
15 Hb_001516_100 0.1151010123 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000116_480 0.1155474966 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
17 Hb_000227_240 0.1155723685 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
18 Hb_008103_120 0.1156859791 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
19 Hb_001318_030 0.1178890248 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
20 Hb_000803_190 0.1182475874 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_130 Hb_005306_130 Hb_005324_010 Hb_005324_010 Hb_005306_130--Hb_005324_010 Hb_004734_060 Hb_004734_060 Hb_005306_130--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_005306_130--Hb_033152_080 Hb_000209_020 Hb_000209_020 Hb_005306_130--Hb_000209_020 Hb_000139_240 Hb_000139_240 Hb_005306_130--Hb_000139_240 Hb_000059_210 Hb_000059_210 Hb_005306_130--Hb_000059_210 Hb_005324_010--Hb_004734_060 Hb_005324_010--Hb_000209_020 Hb_000953_010 Hb_000953_010 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_005324_010--Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_033152_080--Hb_000803_190 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130 Hb_033152_080--Hb_000209_020 Hb_000209_020--Hb_000184_130 Hb_000209_020--Hb_000139_240 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010 Hb_000139_240--Hb_005324_010 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_000139_240--Hb_004734_060 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_006586_050 Hb_006586_050 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_000059_210--Hb_033152_080 Hb_000059_210--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
927.616 1218.95 102.471 330.294 873.142 1467.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
854.755 696.219 974.679 752.387 107.616

CAGE analysis