Hb_000059_210

Information

Type -
Description -
Location Contig59: 214218-215919
Sequence    

Annotation

kegg
ID rcu:RCOM_0215280
description hypothetical protein
nr
ID XP_002533718.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8C1C1
description Proactivator polypeptide-like 1 OS=Mus musculus GN=Psapl1 PE=1 SV=2
trembl
ID B9T649
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0215280 PE=4 SV=1
Gene Ontology
ID GO:0006629
description proactivator polypeptide-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50171: 214379-215765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001936_020 0.0741707267 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
3 Hb_006586_050 0.0743066012 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
4 Hb_156850_030 0.0759600406 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
5 Hb_000291_190 0.082822388 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
6 Hb_033152_080 0.0835097893 - - RNA-binding protein Nova-1, putative [Ricinus communis]
7 Hb_004734_060 0.0841662875 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_001655_070 0.0846817409 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
9 Hb_000032_320 0.084953189 - - protein binding protein, putative [Ricinus communis]
10 Hb_000803_190 0.0874449986 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_000483_360 0.0903801091 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
12 Hb_012634_010 0.0908477937 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
13 Hb_082609_020 0.0909476772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_093084_060 0.0923915696 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
15 Hb_004223_090 0.092615019 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
16 Hb_000300_280 0.0944138664 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_002027_260 0.0950818042 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
18 Hb_000923_020 0.0955028536 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
19 Hb_001252_010 0.0960275208 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
20 Hb_000224_060 0.0962848288 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_210 Hb_000059_210 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_006586_050 Hb_006586_050 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060 Hb_003994_240 Hb_003994_240 Hb_001936_020--Hb_003994_240 Hb_004577_020 Hb_004577_020 Hb_001936_020--Hb_004577_020 Hb_000483_360 Hb_000483_360 Hb_001936_020--Hb_000483_360 Hb_004108_140 Hb_004108_140 Hb_001936_020--Hb_004108_140 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_000521_260 Hb_000521_260 Hb_006586_050--Hb_000521_260 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_156850_030--Hb_000032_320 Hb_001728_100 Hb_001728_100 Hb_156850_030--Hb_001728_100 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070 Hb_000865_080 Hb_000865_080 Hb_000291_190--Hb_000865_080 Hb_000224_060 Hb_000224_060 Hb_000291_190--Hb_000224_060 Hb_000025_360 Hb_000025_360 Hb_000291_190--Hb_000025_360 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_004734_060--Hb_000803_190 Hb_004734_060--Hb_000953_010 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_004734_060--Hb_000184_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
344.706 317.181 87.5003 125.335 368.109 383.227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
319.144 226.517 246.493 212.788 48.1836

CAGE analysis