Hb_004108_140

Information

Type -
Description -
Location Contig4108: 97759-116237
Sequence    

Annotation

kegg
ID rcu:RCOM_0176350
description glutathione peroxidase, putative (EC:1.11.1.12)
nr
ID XP_012092288.1
description PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
swissprot
ID F4IN78
description HUA2-like protein 3 OS=Arabidopsis thaliana GN=At2g48160 PE=2 SV=2
trembl
ID A0A067JPN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21965 PE=4 SV=1
Gene Ontology
ID GO:0004602
description tudor pwwp mbt domain-containing isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40572: 97584-105935 , PASA_asmbl_40573: 97758-104796 , PASA_asmbl_40574: 97859-98001 , PASA_asmbl_40575: 105939-110819 , PASA_asmbl_40577: 112911-114419 , PASA_asmbl_40578: 112886-116146 , PASA_asmbl_40579: 115006-115378
cDNA
(Sanger)
(ID:Location)		 033_C22.ab1: 112911-114188 , 037_I12.ab1: 112911-114188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_140 0.0 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
2 Hb_026099_010 0.0460131161 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
3 Hb_185679_010 0.0659749756 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
4 Hb_003994_240 0.0701412236 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
5 Hb_001936_020 0.0725494197 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
6 Hb_003935_030 0.0790098134 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
7 Hb_004370_030 0.0792541756 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
8 Hb_003299_070 0.0811997434 - - AMP deaminase [Theobroma cacao]
9 Hb_007317_190 0.0817976927 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_004586_180 0.0819342784 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
11 Hb_010931_080 0.0821011137 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
12 Hb_002044_060 0.0840685182 - - elongation factor ts, putative [Ricinus communis]
13 Hb_000046_440 0.0859266107 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
14 Hb_007632_020 0.0865813405 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
15 Hb_002784_060 0.0870315648 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
16 Hb_000160_040 0.08713616 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
17 Hb_003728_030 0.0883003572 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
18 Hb_000429_120 0.0894581983 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
19 Hb_001221_040 0.091269889 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
20 Hb_004934_090 0.0915967065 - - hypothetical protein JCGZ_08073 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_140 Hb_004108_140 Hb_026099_010 Hb_026099_010 Hb_004108_140--Hb_026099_010 Hb_185679_010 Hb_185679_010 Hb_004108_140--Hb_185679_010 Hb_003994_240 Hb_003994_240 Hb_004108_140--Hb_003994_240 Hb_001936_020 Hb_001936_020 Hb_004108_140--Hb_001936_020 Hb_003935_030 Hb_003935_030 Hb_004108_140--Hb_003935_030 Hb_004370_030 Hb_004370_030 Hb_004108_140--Hb_004370_030 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_026099_010--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_185679_010--Hb_003935_030 Hb_003299_070 Hb_003299_070 Hb_185679_010--Hb_003299_070 Hb_185679_010--Hb_002044_060 Hb_185679_010--Hb_026099_010 Hb_005914_060 Hb_005914_060 Hb_185679_010--Hb_005914_060 Hb_003994_240--Hb_001936_020 Hb_004934_090 Hb_004934_090 Hb_003994_240--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_002030_030 Hb_002030_030 Hb_003994_240--Hb_002030_030 Hb_004577_020 Hb_004577_020 Hb_001936_020--Hb_004577_020 Hb_000483_360 Hb_000483_360 Hb_001936_020--Hb_000483_360 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000059_210 Hb_000059_210 Hb_001936_020--Hb_000059_210 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_003935_030--Hb_003299_070 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_004370_030--Hb_002044_060 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_002942_160 Hb_002942_160 Hb_004370_030--Hb_002942_160 Hb_004370_030--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5965 20.8704 7.8594 8.78118 28.2744 37.4023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6563 14.9096 12.4127 23.3364 10.0023

CAGE analysis