Hb_003299_070

Information

Type -
Description -
Location Contig3299: 95523-117439
Sequence    

Annotation

kegg
ID tcc:TCM_010011
description AMP deaminase
nr
ID XP_007044387.1
description AMP deaminase [Theobroma cacao]
swissprot
ID O80452
description AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2
trembl
ID A0A061ED95
description AMP deaminase OS=Theobroma cacao GN=TCM_010011 PE=4 SV=1
Gene Ontology
ID GO:0003876
description probable amp deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34661: 95603-96037 , PASA_asmbl_34663: 105724-106173 , PASA_asmbl_34664: 105196-108188 , PASA_asmbl_34665: 108350-117993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_070 0.0 - - AMP deaminase [Theobroma cacao]
2 Hb_003935_030 0.0653981136 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
3 Hb_001454_320 0.0686610318 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
4 Hb_185679_010 0.0691362446 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
5 Hb_000109_100 0.0703944232 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
6 Hb_002163_010 0.0711923343 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
7 Hb_010695_020 0.0740784981 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
8 Hb_005494_020 0.0790560087 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
9 Hb_002044_060 0.0793472072 - - elongation factor ts, putative [Ricinus communis]
10 Hb_063716_080 0.0794737298 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
11 Hb_002960_160 0.0801007318 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
12 Hb_000796_190 0.0806760713 - - hypothetical protein F383_31148 [Gossypium arboreum]
13 Hb_004108_140 0.0811997434 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
14 Hb_000567_010 0.0812194706 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
15 Hb_000120_610 0.0812470618 - - mitotic control protein dis3, putative [Ricinus communis]
16 Hb_031042_070 0.0820270001 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007558_120 0.0828579206 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_000594_020 0.0829574374 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
19 Hb_000300_440 0.0833014463 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
20 Hb_000160_290 0.08466541 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003299_070 Hb_003299_070 Hb_003935_030 Hb_003935_030 Hb_003299_070--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_010695_020 Hb_010695_020 Hb_003299_070--Hb_010695_020 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120 Hb_004108_140 Hb_004108_140 Hb_185679_010--Hb_004108_140 Hb_185679_010--Hb_003935_030 Hb_002044_060 Hb_002044_060 Hb_185679_010--Hb_002044_060 Hb_026099_010 Hb_026099_010 Hb_185679_010--Hb_026099_010 Hb_005914_060 Hb_005914_060 Hb_185679_010--Hb_005914_060 Hb_000505_020 Hb_000505_020 Hb_000109_100--Hb_000505_020 Hb_000109_100--Hb_000160_290 Hb_002078_100 Hb_002078_100 Hb_000109_100--Hb_002078_100 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_031042_070 Hb_031042_070 Hb_002163_010--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_002163_010--Hb_001633_040 Hb_002163_010--Hb_003935_030 Hb_002163_010--Hb_001454_320 Hb_002042_140 Hb_002042_140 Hb_010695_020--Hb_002042_140 Hb_010695_020--Hb_000796_190 Hb_010695_020--Hb_007558_120 Hb_010695_020--Hb_000160_290 Hb_010695_020--Hb_003935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.40612 7.11524 3.46099 3.46854 8.06704 10.2615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69235 2.94097 2.46409 6.08094 3.08885

CAGE analysis