Hb_001623_480

Information

Type -
Description -
Location Contig1623: 363833-372051
Sequence    

Annotation

kegg
ID cic:CICLE_v10004340mg
description hypothetical protein
nr
ID XP_012077644.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
swissprot
ID Q93Y39
description DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana GN=RH13 PE=2 SV=3
trembl
ID A0A067KM45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12899 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14730: 365920-367593 , PASA_asmbl_14731: 364404-367593 , PASA_asmbl_14733: 368227-371963
cDNA
(Sanger)
(ID:Location)		 033_E09.ab1: 370659-371963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_480 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
2 Hb_008024_030 0.0529640087 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
3 Hb_000920_210 0.0602912503 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
4 Hb_004920_090 0.0611125186 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000740_100 0.0628872548 - - calpain, putative [Ricinus communis]
6 Hb_000109_100 0.0660392448 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
7 Hb_104061_020 0.0695370166 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_002329_040 0.071385783 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
9 Hb_027380_140 0.0723349439 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
10 Hb_000505_020 0.0728188715 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
11 Hb_000190_120 0.0735021682 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
12 Hb_004453_110 0.0737064885 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
13 Hb_000429_220 0.0751718949 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_003952_150 0.0752440712 - - PREDICTED: cactin [Jatropha curcas]
15 Hb_009175_020 0.0766045605 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
16 Hb_000856_140 0.0770060836 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
17 Hb_002422_050 0.077452089 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
18 Hb_000544_010 0.0781453115 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
19 Hb_001343_040 0.0797085908 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
20 Hb_001935_110 0.0830350889 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001623_480 Hb_001623_480 Hb_008024_030 Hb_008024_030 Hb_001623_480--Hb_008024_030 Hb_000920_210 Hb_000920_210 Hb_001623_480--Hb_000920_210 Hb_004920_090 Hb_004920_090 Hb_001623_480--Hb_004920_090 Hb_000740_100 Hb_000740_100 Hb_001623_480--Hb_000740_100 Hb_000109_100 Hb_000109_100 Hb_001623_480--Hb_000109_100 Hb_104061_020 Hb_104061_020 Hb_001623_480--Hb_104061_020 Hb_008024_030--Hb_004920_090 Hb_027380_140 Hb_027380_140 Hb_008024_030--Hb_027380_140 Hb_008024_030--Hb_000740_100 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_012395_140 Hb_012395_140 Hb_008024_030--Hb_012395_140 Hb_003952_150 Hb_003952_150 Hb_000920_210--Hb_003952_150 Hb_000033_030 Hb_000033_030 Hb_000920_210--Hb_000033_030 Hb_000190_120 Hb_000190_120 Hb_000920_210--Hb_000190_120 Hb_010381_060 Hb_010381_060 Hb_000920_210--Hb_010381_060 Hb_025477_040 Hb_025477_040 Hb_000920_210--Hb_025477_040 Hb_000679_020 Hb_000679_020 Hb_004920_090--Hb_000679_020 Hb_000563_420 Hb_000563_420 Hb_004920_090--Hb_000563_420 Hb_000035_170 Hb_000035_170 Hb_004920_090--Hb_000035_170 Hb_000544_010 Hb_000544_010 Hb_004920_090--Hb_000544_010 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_000740_100--Hb_104061_020 Hb_000505_020 Hb_000505_020 Hb_000109_100--Hb_000505_020 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_002078_100 Hb_002078_100 Hb_000109_100--Hb_002078_100 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2019 12.0231 7.8751 7.27623 18.0313 15.5031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.716 5.71751 6.82344 13.7045 12.9599

CAGE analysis