Hb_000033_030

Information

Type -
Description -
Location Contig33: 40898-53463
Sequence    

Annotation

kegg
ID rcu:RCOM_0385680
description hypothetical protein
nr
ID XP_012081905.1
description PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
swissprot
ID Q9M1Y3
description Ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1
trembl
ID A0A067K075
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34679: 40338-53453 , PASA_asmbl_34681: 47158-53444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000033_030 0.0 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
2 Hb_000920_210 0.0678416361 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
3 Hb_003952_150 0.0801923363 - - PREDICTED: cactin [Jatropha curcas]
4 Hb_000072_350 0.0812679033 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
5 Hb_002974_060 0.083115641 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
6 Hb_000743_040 0.0841450002 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_003052_150 0.0861315349 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
8 Hb_016898_010 0.0879862861 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
9 Hb_009535_020 0.0881436184 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
10 Hb_000600_070 0.0891906973 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_004218_030 0.0894139516 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000446_120 0.0899309934 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
13 Hb_028487_110 0.0915797219 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
14 Hb_000343_030 0.0919665357 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
15 Hb_002053_080 0.0936346485 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
16 Hb_003362_070 0.0969287729 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
17 Hb_106371_010 0.0974734073 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_001623_480 0.097722894 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
19 Hb_000429_120 0.0982752211 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
20 Hb_010417_050 0.1002815918 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]

Gene co-expression network

sample Hb_000033_030 Hb_000033_030 Hb_000920_210 Hb_000920_210 Hb_000033_030--Hb_000920_210 Hb_003952_150 Hb_003952_150 Hb_000033_030--Hb_003952_150 Hb_000072_350 Hb_000072_350 Hb_000033_030--Hb_000072_350 Hb_002974_060 Hb_002974_060 Hb_000033_030--Hb_002974_060 Hb_000743_040 Hb_000743_040 Hb_000033_030--Hb_000743_040 Hb_003052_150 Hb_003052_150 Hb_000033_030--Hb_003052_150 Hb_001623_480 Hb_001623_480 Hb_000920_210--Hb_001623_480 Hb_000920_210--Hb_003952_150 Hb_000190_120 Hb_000190_120 Hb_000920_210--Hb_000190_120 Hb_010381_060 Hb_010381_060 Hb_000920_210--Hb_010381_060 Hb_025477_040 Hb_025477_040 Hb_000920_210--Hb_025477_040 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_000072_350--Hb_000743_040 Hb_001502_060 Hb_001502_060 Hb_000072_350--Hb_001502_060 Hb_000072_350--Hb_000320_200 Hb_000529_260 Hb_000529_260 Hb_000072_350--Hb_000529_260 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000743_040--Hb_010381_060 Hb_009627_010 Hb_009627_010 Hb_003052_150--Hb_009627_010 Hb_003052_150--Hb_010381_060 Hb_028487_110 Hb_028487_110 Hb_003052_150--Hb_028487_110 Hb_003544_100 Hb_003544_100 Hb_003052_150--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_003052_150--Hb_009411_010 Hb_001638_250 Hb_001638_250 Hb_003052_150--Hb_001638_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7786 29.8766 9.70681 19.2431 58.1179 53.7506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8108 16.9289 25.6579 37.4808 32.6659

CAGE analysis