Hb_002974_060

Information

Type -
Description -
Location Contig2974: 47984-50592
Sequence    

Annotation

kegg
ID rcu:RCOM_1358850
description RNA binding protein, putative
nr
ID XP_012079026.1
description PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
swissprot
ID Q94KD0
description Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana GN=TAF15B PE=1 SV=1
trembl
ID A0A067LEZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17390 PE=4 SV=1
Gene Ontology
ID GO:0000166
description transcription initiation factor tfiid subunit 15b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31150: 43613-50698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002974_060 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
2 Hb_011716_020 0.0659750505 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
3 Hb_002551_070 0.0743958578 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
4 Hb_002600_140 0.0745615023 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
5 Hb_001496_070 0.0815114183 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
6 Hb_000446_120 0.0822887644 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
7 Hb_116929_010 0.0830334568 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
8 Hb_000033_030 0.083115641 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
9 Hb_007805_010 0.0840589399 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
10 Hb_002493_020 0.0856661092 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
11 Hb_000236_310 0.0867209492 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
12 Hb_009535_020 0.0876480551 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_002028_170 0.088692183 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
14 Hb_003623_030 0.0898548218 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
15 Hb_000785_040 0.0898777119 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
16 Hb_000023_190 0.091670408 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_032631_040 0.0917508731 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
18 Hb_010417_050 0.0920140666 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
19 Hb_011310_160 0.0920808848 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
20 Hb_016898_010 0.0923039553 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_002974_060 Hb_002974_060 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_003623_030 Hb_003623_030 Hb_002551_070--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_003966_030 Hb_003966_030 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_002493_020 Hb_002493_020 Hb_001496_070--Hb_002493_020 Hb_005901_020 Hb_005901_020 Hb_001496_070--Hb_005901_020 Hb_001449_040 Hb_001449_040 Hb_001496_070--Hb_001449_040 Hb_000362_150 Hb_000362_150 Hb_001496_070--Hb_000362_150 Hb_000983_150 Hb_000983_150 Hb_001496_070--Hb_000983_150 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_002784_110 Hb_002784_110 Hb_000446_120--Hb_002784_110 Hb_030627_060 Hb_030627_060 Hb_000446_120--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_025194_040 Hb_025194_040 Hb_000446_120--Hb_025194_040 Hb_002301_080 Hb_002301_080 Hb_116929_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_002400_240 Hb_002400_240 Hb_116929_010--Hb_002400_240 Hb_003044_020 Hb_003044_020 Hb_116929_010--Hb_003044_020 Hb_116929_010--Hb_000183_020 Hb_116929_010--Hb_003623_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4573 19.0137 7.10872 18.0031 34.3438 48.6446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8505 11.5492 19.8013 31.2386 28.1473

CAGE analysis