Hb_002028_170

Information

Type -
Description -
Location Contig2028: 175459-199666
Sequence    

Annotation

kegg
ID rcu:RCOM_0708240
description guanine nucleotide-exchange, putative
nr
ID XP_012077147.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
swissprot
ID F4IXW2
description Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2
trembl
ID A0A067KCX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07563 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20767: 175814-199796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_170 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
2 Hb_011716_020 0.0618208763 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
3 Hb_003623_030 0.0686093575 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
4 Hb_000158_100 0.0809930593 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000136_060 0.0837153252 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
6 Hb_007904_220 0.0881383224 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
7 Hb_000343_030 0.0883469091 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
8 Hb_002974_060 0.088692183 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
9 Hb_000347_130 0.0902969595 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
10 Hb_000743_050 0.0905453756 - - unnamed protein product [Vitis vinifera]
11 Hb_002551_070 0.092340856 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
12 Hb_001541_080 0.092654896 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000739_220 0.0938147111 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
14 Hb_067345_010 0.0948550137 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
15 Hb_042487_010 0.0955770952 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
16 Hb_025012_010 0.0980621422 - - PREDICTED: importin-4 [Vitis vinifera]
17 Hb_000300_440 0.0980834413 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
18 Hb_003916_010 0.0984861351 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
19 Hb_005494_020 0.0994490115 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_000023_190 0.0997398814 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002028_170 Hb_002028_170 Hb_011716_020 Hb_011716_020 Hb_002028_170--Hb_011716_020 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_000158_100 Hb_000158_100 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_002600_140 Hb_002600_140 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_000158_100--Hb_000136_060 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000136_060--Hb_003623_030 Hb_000136_060--Hb_011716_020 Hb_000136_060--Hb_000743_050 Hb_000136_060--Hb_001900_110 Hb_005205_020 Hb_005205_020 Hb_007904_220--Hb_005205_020 Hb_025012_010 Hb_025012_010 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_002067_150 Hb_002067_150 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_000300_440 Hb_000300_440 Hb_000343_030--Hb_000300_440 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_100215_010 Hb_100215_010 Hb_000343_030--Hb_100215_010 Hb_003952_150 Hb_003952_150 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9343 12.0094 4.5277 7.28658 18.6098 31.8194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7716 4.425 8.95709 20.8015 10.1605

CAGE analysis