Hb_001900_110

Information

Type -
Description -
Location Contig1900: 158428-162373
Sequence    

Annotation

kegg
ID rcu:RCOM_0866490
description replication factor A 1, rfa1, putative
nr
ID XP_012070498.1
description PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
swissprot
ID Q9FHJ6
description Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1
trembl
ID A0A067KU82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02766 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 70 kda dna-binding subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18948: 161383-161757 , PASA_asmbl_18949: 161937-162154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_110 0.0 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
2 Hb_141547_010 0.0843049473 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
3 Hb_000158_100 0.0852941651 - - conserved hypothetical protein [Ricinus communis]
4 Hb_029142_010 0.0864321024 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
5 Hb_000997_030 0.0904621777 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_000023_060 0.0915789843 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
7 Hb_000236_080 0.0933219411 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
8 Hb_003623_030 0.0947032646 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
9 Hb_000739_220 0.097586113 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
10 Hb_042487_010 0.1012352294 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
11 Hb_000699_250 0.1020083947 - - Poly(rC)-binding protein, putative [Ricinus communis]
12 Hb_000107_040 0.1020818248 - - nuclear pore complex protein nup153, putative [Ricinus communis]
13 Hb_004310_050 0.1049229104 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
14 Hb_005494_020 0.1063903714 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
15 Hb_000574_070 0.106401303 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
16 Hb_000136_060 0.1074261155 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
17 Hb_002028_170 0.1077009027 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
18 Hb_001322_210 0.110487823 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
19 Hb_000270_760 0.1124448222 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
20 Hb_067345_010 0.1131017937 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]

Gene co-expression network

sample Hb_001900_110 Hb_001900_110 Hb_141547_010 Hb_141547_010 Hb_001900_110--Hb_141547_010 Hb_000158_100 Hb_000158_100 Hb_001900_110--Hb_000158_100 Hb_029142_010 Hb_029142_010 Hb_001900_110--Hb_029142_010 Hb_000997_030 Hb_000997_030 Hb_001900_110--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_001900_110--Hb_000023_060 Hb_000236_080 Hb_000236_080 Hb_001900_110--Hb_000236_080 Hb_141547_010--Hb_000997_030 Hb_141547_010--Hb_000023_060 Hb_002400_240 Hb_002400_240 Hb_141547_010--Hb_002400_240 Hb_006816_300 Hb_006816_300 Hb_141547_010--Hb_006816_300 Hb_002762_130 Hb_002762_130 Hb_141547_010--Hb_002762_130 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_029142_010--Hb_000023_060 Hb_029142_010--Hb_000997_030 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000997_030--Hb_000107_040 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000236_080--Hb_000023_060 Hb_000236_080--Hb_000107_040 Hb_000181_180 Hb_000181_180 Hb_000236_080--Hb_000181_180 Hb_000236_080--Hb_000997_030 Hb_000236_080--Hb_003623_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9668 17.8908 3.08296 5.89235 12.4857 28.8433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2705 4.28022 9.50121 14.4367 5.92381

CAGE analysis