Hb_002762_130

Information

Type -
Description -
Location Contig2762: 127109-137737
Sequence    

Annotation

kegg
ID rcu:RCOM_1509910
description hypothetical protein
nr
ID XP_012080021.1
description PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
swissprot
ID Q9SB63
description Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana GN=MOS1 PE=1 SV=2
trembl
ID A0A067K4B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11442 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28905: 127167-138418 , PASA_asmbl_28906: 138220-138440 , PASA_asmbl_28909: 133628-135992
cDNA
(Sanger)
(ID:Location)		 040_E05.ab1: 138220-138440

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_130 0.0 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
2 Hb_000162_020 0.0760948141 - - protein translocase, putative [Ricinus communis]
3 Hb_018133_050 0.0812023385 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
4 Hb_034243_020 0.0815254598 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
5 Hb_000997_030 0.0835059654 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_133047_010 0.0858244671 - - xanthine dehydrogenase, putative [Ricinus communis]
7 Hb_001493_040 0.0861587488 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
8 Hb_003106_030 0.0875464954 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_157966_010 0.0884170099 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
10 Hb_002392_030 0.090161661 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
11 Hb_004659_080 0.090862899 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
12 Hb_011671_230 0.0912646462 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001221_160 0.0960198215 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
14 Hb_002400_240 0.0963505172 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
15 Hb_141547_010 0.096935873 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
16 Hb_004543_030 0.0981567698 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_015475_020 0.0982335958 - - importin beta-1, putative [Ricinus communis]
18 Hb_005104_010 0.0984255415 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
19 Hb_111985_080 0.0996427344 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
20 Hb_000640_200 0.1020985734 - - hypothetical protein RCOM_1346600 [Ricinus communis]

Gene co-expression network

sample Hb_002762_130 Hb_002762_130 Hb_000162_020 Hb_000162_020 Hb_002762_130--Hb_000162_020 Hb_018133_050 Hb_018133_050 Hb_002762_130--Hb_018133_050 Hb_034243_020 Hb_034243_020 Hb_002762_130--Hb_034243_020 Hb_000997_030 Hb_000997_030 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040 Hb_003106_030 Hb_003106_030 Hb_000162_020--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_000162_020--Hb_003994_100 Hb_000061_510 Hb_000061_510 Hb_000162_020--Hb_000061_510 Hb_000406_020 Hb_000406_020 Hb_000162_020--Hb_000406_020 Hb_005214_150 Hb_005214_150 Hb_000162_020--Hb_005214_150 Hb_157966_010 Hb_157966_010 Hb_018133_050--Hb_157966_010 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_034243_020--Hb_133047_010 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_000997_030--Hb_034243_020 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_133047_010--Hb_148909_030 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2663 50.2541 12.5867 14.675 36.6423 52.6854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.862 8.80311 14.6232 26.505 23.012

CAGE analysis