Hb_111985_080

Information

Type -
Description -
Location Contig111985: 51393-54059
Sequence    

Annotation

kegg
ID mdm:103440290
description pentatricopeptide repeat-containing protein At1g19720
nr
ID XP_012071943.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
swissprot
ID Q9FXH1
description Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
trembl
ID U5GRY4
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0002s03160g PE=4 SV=1
Gene Ontology
ID GO:0005634
description pentatricopeptide repeat-containing protein at1g19720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03611: 51384-51480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
2 Hb_133047_010 0.0513807095 - - xanthine dehydrogenase, putative [Ricinus communis]
3 Hb_148909_030 0.0691024678 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
4 Hb_002301_080 0.0729971082 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
5 Hb_030627_060 0.0775934306 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
6 Hb_004718_010 0.0804554158 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
7 Hb_064903_010 0.0811792398 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_002392_030 0.0813905067 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
9 Hb_116929_010 0.0826821128 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
10 Hb_004884_010 0.0843152255 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
11 Hb_002400_240 0.0858147239 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
12 Hb_000375_130 0.0872717152 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
13 Hb_004659_080 0.0898234641 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_000589_040 0.0898524275 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
15 Hb_000856_140 0.0938188471 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
16 Hb_001080_270 0.0939248955 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
17 Hb_002471_210 0.0940145001 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
18 Hb_001221_160 0.0950371186 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_010315_090 0.0954747599 - - suppressor of ty, putative [Ricinus communis]
20 Hb_034243_020 0.0958766054 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_111985_080 Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_148909_030 Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_002301_080 Hb_002301_080 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_002400_240 Hb_002400_240 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_064903_010--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04194 3.41774 1.12641 1.36616 5.08148 3.82973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.790742 0.829648 1.75688 2.4698 2.17992

CAGE analysis