Hb_010578_060

Information

Type -
Description -
Location Contig10578: 54397-67409
Sequence    

Annotation

kegg
ID cic:CICLE_v10000014mg
description hypothetical protein
nr
ID XP_012089264.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
swissprot
ID Q9SR02
description Mediator of RNA polymerase II transcription subunit 14 OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
trembl
ID A0A067JUK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23498 PE=4 SV=1
Gene Ontology
ID GO:0009506
description mediator of rna polymerase ii transcription subunit 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01905: 59756-62230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_060 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
2 Hb_004718_010 0.0511714939 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
3 Hb_000959_040 0.0698463982 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
4 Hb_183963_030 0.0709000008 - - DNA binding protein, putative [Ricinus communis]
5 Hb_002188_110 0.0718441683 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_001247_070 0.0770874838 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
7 Hb_004543_030 0.0782455803 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_001967_030 0.0831918776 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
9 Hb_001268_350 0.0844333527 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
10 Hb_018133_050 0.0858317083 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
11 Hb_000832_130 0.0860162837 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
12 Hb_000077_370 0.086314151 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
13 Hb_006649_060 0.0868198631 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014267_010 0.0877635817 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
15 Hb_002301_080 0.0933661594 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
16 Hb_002400_240 0.095118376 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
17 Hb_001080_270 0.0951378369 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
18 Hb_000540_060 0.0958658485 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
19 Hb_002524_040 0.0980073472 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
20 Hb_124315_020 0.0986240175 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010578_060 Hb_010578_060 Hb_004718_010 Hb_004718_010 Hb_010578_060--Hb_004718_010 Hb_000959_040 Hb_000959_040 Hb_010578_060--Hb_000959_040 Hb_183963_030 Hb_183963_030 Hb_010578_060--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_010578_060--Hb_002188_110 Hb_001247_070 Hb_001247_070 Hb_010578_060--Hb_001247_070 Hb_004543_030 Hb_004543_030 Hb_010578_060--Hb_004543_030 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_007676_100 Hb_007676_100 Hb_000959_040--Hb_007676_100 Hb_000959_040--Hb_002188_110 Hb_000959_040--Hb_183963_030 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_183963_030--Hb_002188_110 Hb_000025_360 Hb_000025_360 Hb_183963_030--Hb_000025_360 Hb_004128_050 Hb_004128_050 Hb_183963_030--Hb_004128_050 Hb_183963_030--Hb_001247_070 Hb_002188_110--Hb_000025_360 Hb_002188_110--Hb_007676_100 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_002188_110--Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_034243_020 Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_007576_120 Hb_007576_120 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25318 12.5282 2.24747 2.74749 12.0685 12.6773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50452 4.04271 7.82943 5.7463 6.42677

CAGE analysis