Hb_000107_040

Information

Type -
Description -
Location Contig107: 30700-49762
Sequence    

Annotation

kegg
ID rcu:RCOM_0342670
description nuclear pore complex protein nup153, putative
nr
ID XP_002523390.1
description nuclear pore complex protein nup153, putative [Ricinus communis]
swissprot
ID F4I1T7
description Nuclear pore complex protein NUP214 OS=Arabidopsis thaliana GN=NUP214 PE=1 SV=1
trembl
ID B9SBM1
description Nuclear pore complex protein nup153, putative OS=Ricinus communis GN=RCOM_0342670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nuclear pore complex

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02125: 30734-47612 , PASA_asmbl_02126: 33802-34213 , PASA_asmbl_02127: 48642-49856
cDNA
(Sanger)
(ID:Location)		 031_I23r.ab1: 50354-51827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_040 0.0 - - nuclear pore complex protein nup153, putative [Ricinus communis]
2 Hb_000997_030 0.0666547296 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_029142_010 0.0678546323 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
4 Hb_003623_030 0.0693406687 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
5 Hb_000023_060 0.0761467282 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
6 Hb_030565_090 0.0782630598 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
7 Hb_000264_100 0.0808432133 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000236_080 0.0844006962 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
9 Hb_007576_120 0.0879166775 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
10 Hb_028487_010 0.0889892896 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
11 Hb_001493_040 0.0891385684 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
12 Hb_116929_010 0.0892130671 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
13 Hb_034243_020 0.0904435131 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
14 Hb_004218_030 0.0905055027 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001028_070 0.0915789325 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
16 Hb_005494_020 0.0926922904 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
17 Hb_004543_030 0.0934580268 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
18 Hb_004602_040 0.0950318453 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
19 Hb_001268_350 0.0951461116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
20 Hb_001417_050 0.0957813701 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]

Gene co-expression network

sample Hb_000107_040 Hb_000107_040 Hb_000997_030 Hb_000997_030 Hb_000107_040--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000107_040--Hb_029142_010 Hb_003623_030 Hb_003623_030 Hb_000107_040--Hb_003623_030 Hb_000023_060 Hb_000023_060 Hb_000107_040--Hb_000023_060 Hb_030565_090 Hb_030565_090 Hb_000107_040--Hb_030565_090 Hb_000264_100 Hb_000264_100 Hb_000107_040--Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_029142_010--Hb_000023_060 Hb_029142_010--Hb_000997_030 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_002028_170 Hb_002028_170 Hb_003623_030--Hb_002028_170 Hb_000158_100 Hb_000158_100 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_030565_090--Hb_000264_100 Hb_030565_090--Hb_034243_020 Hb_033883_060 Hb_033883_060 Hb_030565_090--Hb_033883_060 Hb_031042_070 Hb_031042_070 Hb_030565_090--Hb_031042_070 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5086 24.7889 5.37867 6.95972 21.8589 30.5324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2211 8.56423 8.33364 22.5566 12.7978

CAGE analysis