Hb_003106_030

Information

Type -
Description -
Location Contig3106: 25274-26804
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08080g
description POPTRDRAFT_251873; hypothetical protein
nr
ID XP_012080156.1
description PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
swissprot
ID O95628
description CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3
trembl
ID A0A067KH63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11540 PE=4 SV=1
Gene Ontology
ID GO:0008270
description anti-virus transcriptional factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32866: 25326-27051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_030 0.0 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
2 Hb_005104_010 0.0743533577 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
3 Hb_002762_130 0.0875464954 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
4 Hb_000345_150 0.0891847676 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
5 Hb_000836_020 0.0906170438 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
6 Hb_010712_040 0.0924128311 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
7 Hb_002784_010 0.0941834362 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
8 Hb_006573_170 0.0985253822 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002837_110 0.100042506 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
10 Hb_000162_020 0.1007919637 - - protein translocase, putative [Ricinus communis]
11 Hb_000786_040 0.1012367227 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
12 Hb_005214_150 0.1014624176 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
13 Hb_007576_120 0.103221805 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
14 Hb_157966_010 0.1043331583 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
15 Hb_001493_040 0.10443514 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
16 Hb_003994_100 0.1047685738 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
17 Hb_001006_100 0.1054104416 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
18 Hb_011671_230 0.105590878 - - conserved hypothetical protein [Ricinus communis]
19 Hb_018133_050 0.1063011968 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
20 Hb_007813_030 0.1064008198 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_030 Hb_003106_030 Hb_005104_010 Hb_005104_010 Hb_003106_030--Hb_005104_010 Hb_002762_130 Hb_002762_130 Hb_003106_030--Hb_002762_130 Hb_000345_150 Hb_000345_150 Hb_003106_030--Hb_000345_150 Hb_000836_020 Hb_000836_020 Hb_003106_030--Hb_000836_020 Hb_010712_040 Hb_010712_040 Hb_003106_030--Hb_010712_040 Hb_002784_010 Hb_002784_010 Hb_003106_030--Hb_002784_010 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_004629_010 Hb_004629_010 Hb_005104_010--Hb_004629_010 Hb_000120_660 Hb_000120_660 Hb_005104_010--Hb_000120_660 Hb_000786_040 Hb_000786_040 Hb_005104_010--Hb_000786_040 Hb_005104_010--Hb_000345_150 Hb_000162_020 Hb_000162_020 Hb_002762_130--Hb_000162_020 Hb_018133_050 Hb_018133_050 Hb_002762_130--Hb_018133_050 Hb_034243_020 Hb_034243_020 Hb_002762_130--Hb_034243_020 Hb_000997_030 Hb_000997_030 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040 Hb_002022_070 Hb_002022_070 Hb_000345_150--Hb_002022_070 Hb_000345_150--Hb_000786_040 Hb_000345_150--Hb_004629_010 Hb_005539_090 Hb_005539_090 Hb_000345_150--Hb_005539_090 Hb_000345_150--Hb_034243_020 Hb_003581_170 Hb_003581_170 Hb_000836_020--Hb_003581_170 Hb_011242_060 Hb_011242_060 Hb_000836_020--Hb_011242_060 Hb_001699_280 Hb_001699_280 Hb_000836_020--Hb_001699_280 Hb_000265_090 Hb_000265_090 Hb_000836_020--Hb_000265_090 Hb_000703_130 Hb_000703_130 Hb_000836_020--Hb_000703_130 Hb_188063_010 Hb_188063_010 Hb_000836_020--Hb_188063_010 Hb_000661_130 Hb_000661_130 Hb_010712_040--Hb_000661_130 Hb_010712_040--Hb_000265_090 Hb_010712_040--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_010712_040--Hb_006117_080 Hb_010712_040--Hb_000703_130 Hb_010712_040--Hb_000836_020 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6299 40.1543 10.4496 10.503 18.1689 31.8222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4563 7.23385 7.54504 14.9626 19.2878

CAGE analysis