Hb_001699_280

Information

Type -
Description -
Location Contig1699: 283435-314900
Sequence    

Annotation

kegg
ID tcc:TCM_000213
description Phosphatidylinositol 3- and 4-kinase family protein with FAT domain isoform 1
nr
ID XP_012065896.1
description PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
swissprot
ID Q9Y4A5
description Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3
trembl
ID A0A061DFS0
description Phosphatidylinositol 3-and 4-kinase family protein with FAT domain isoform 1 OS=Theobroma cacao GN=TCM_000213 PE=4 SV=1
Gene Ontology
ID GO:0016301
description phosphatidylinositol 3- and 4-kinase family protein with fat domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15814: 284517-295481 , PASA_asmbl_15815: 295483-301620 , PASA_asmbl_15816: 301760-314665 , PASA_asmbl_15817: 305100-305263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_280 0.0 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
2 Hb_000105_040 0.0476890025 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
3 Hb_188063_010 0.0502744803 - - hypothetical protein RCOM_1469330 [Ricinus communis]
4 Hb_003581_170 0.0575966012 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_000261_150 0.0618531515 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001662_180 0.0634685104 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
7 Hb_001951_170 0.0652438394 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
8 Hb_002333_050 0.0656860876 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
9 Hb_011828_030 0.0667412447 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
10 Hb_007576_210 0.0694005111 - - PREDICTED: protein furry homolog [Jatropha curcas]
11 Hb_000069_410 0.0696035411 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
12 Hb_000836_020 0.0707006011 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
13 Hb_009486_170 0.0722832664 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
14 Hb_011947_050 0.0759300625 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
15 Hb_000083_270 0.0760522929 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
16 Hb_000025_710 0.079029183 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
17 Hb_012184_060 0.0794564321 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
18 Hb_006531_020 0.079520683 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
19 Hb_001935_140 0.0803567352 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
20 Hb_004223_160 0.0807072929 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_280 Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_001699_280--Hb_000105_040 Hb_188063_010 Hb_188063_010 Hb_001699_280--Hb_188063_010 Hb_003581_170 Hb_003581_170 Hb_001699_280--Hb_003581_170 Hb_000261_150 Hb_000261_150 Hb_001699_280--Hb_000261_150 Hb_001662_180 Hb_001662_180 Hb_001699_280--Hb_001662_180 Hb_001951_170 Hb_001951_170 Hb_001699_280--Hb_001951_170 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_000105_040--Hb_001951_170 Hb_002333_050 Hb_002333_050 Hb_188063_010--Hb_002333_050 Hb_000025_710 Hb_000025_710 Hb_188063_010--Hb_000025_710 Hb_009486_170 Hb_009486_170 Hb_188063_010--Hb_009486_170 Hb_188063_010--Hb_003581_170 Hb_188063_010--Hb_000261_150 Hb_000176_100 Hb_000176_100 Hb_003581_170--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_003581_170--Hb_000949_010 Hb_011242_060 Hb_011242_060 Hb_003581_170--Hb_011242_060 Hb_000836_020 Hb_000836_020 Hb_003581_170--Hb_000836_020 Hb_000083_070 Hb_000083_070 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000261_150--Hb_000025_710 Hb_002095_070 Hb_002095_070 Hb_000261_150--Hb_002095_070 Hb_001662_180--Hb_001951_170 Hb_000175_120 Hb_000175_120 Hb_001662_180--Hb_000175_120 Hb_001124_050 Hb_001124_050 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_014497_020 Hb_014497_020 Hb_001662_180--Hb_014497_020 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54103 26.5074 6.21352 10.0375 12.0035 12.8199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43563 6.19139 7.02553 18.5871 15.5751

CAGE analysis