Hb_000083_070

Information

Type -
Description -
Location Contig83: 145960-179060
Sequence    

Annotation

kegg
ID rcu:RCOM_0884950
description transcription initiation factor tfiid, putative (EC:2.7.11.1)
nr
ID XP_012069189.1
description PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
swissprot
ID Q8LRK9
description Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1
trembl
ID A0A067LA06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24953 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor tfiid subunit 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59769: 145998-160134 , PASA_asmbl_59771: 163201-166166 , PASA_asmbl_59772: 168190-173691 , PASA_asmbl_59773: 173712-179044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_070 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
2 Hb_001133_030 0.0606356602 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
3 Hb_000925_090 0.0608588003 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
4 Hb_003805_050 0.0630323009 - - -
5 Hb_000261_150 0.0644507258 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000025_710 0.0659071379 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_012244_020 0.0679095286 - - calpain, putative [Ricinus communis]
8 Hb_002600_060 0.0693664863 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
9 Hb_000579_010 0.0698192813 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
10 Hb_002909_120 0.0738140131 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
11 Hb_002350_010 0.0756197034 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
12 Hb_013405_160 0.0756628105 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_000377_050 0.0764537884 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
14 Hb_011689_030 0.0766493767 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
15 Hb_005348_010 0.0768702688 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009476_090 0.0775022662 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
17 Hb_006295_020 0.0777089289 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
18 Hb_002174_030 0.0777185974 - - transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_002095_070 0.0791822598 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
20 Hb_001085_030 0.0792058756 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000083_070 Hb_000083_070 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_001133_030--Hb_000925_090 Hb_009486_170 Hb_009486_170 Hb_001133_030--Hb_009486_170 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_005348_010 Hb_005348_010 Hb_003805_050--Hb_005348_010 Hb_000329_750 Hb_000329_750 Hb_003805_050--Hb_000329_750 Hb_002095_070 Hb_002095_070 Hb_003805_050--Hb_002095_070 Hb_024185_010 Hb_024185_010 Hb_003805_050--Hb_024185_010 Hb_006295_020 Hb_006295_020 Hb_003805_050--Hb_006295_020 Hb_001699_280 Hb_001699_280 Hb_000261_150--Hb_001699_280 Hb_188063_010 Hb_188063_010 Hb_000261_150--Hb_188063_010 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000261_150--Hb_000025_710 Hb_000261_150--Hb_002095_070 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_012244_020--Hb_005186_040 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_001648_020 Hb_001648_020 Hb_012244_020--Hb_001648_020 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97592 18.689 8.17992 5.73109 11.3815 11.8924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00699 5.87603 6.40187 11.4091 18.9098

CAGE analysis