Hb_003805_050

Information

Type -
Description -
Location Contig3805: 74216-90136
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A9SQB7
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38579: 79338-79843 , PASA_asmbl_38580: 80088-80984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003805_050 0.0 - - -
2 Hb_000083_070 0.0630323009 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
3 Hb_005348_010 0.0695834125 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_750 0.0764786695 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
5 Hb_002095_070 0.0831528315 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
6 Hb_024185_010 0.0854931819 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
7 Hb_006295_020 0.0872061086 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
8 Hb_002909_120 0.0876420995 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
9 Hb_013405_160 0.0886335896 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
10 Hb_002174_030 0.0903144423 - - transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_001726_050 0.0931241886 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
12 Hb_000261_150 0.0932697256 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001133_030 0.0938715921 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
14 Hb_002600_060 0.0946303416 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_001085_030 0.096118279 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
16 Hb_011689_030 0.0970154626 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
17 Hb_003211_040 0.0976006131 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
18 Hb_003119_080 0.0978720737 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
19 Hb_097185_010 0.0986002421 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
20 Hb_005488_170 0.0990251427 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003805_050 Hb_003805_050 Hb_000083_070 Hb_000083_070 Hb_003805_050--Hb_000083_070 Hb_005348_010 Hb_005348_010 Hb_003805_050--Hb_005348_010 Hb_000329_750 Hb_000329_750 Hb_003805_050--Hb_000329_750 Hb_002095_070 Hb_002095_070 Hb_003805_050--Hb_002095_070 Hb_024185_010 Hb_024185_010 Hb_003805_050--Hb_024185_010 Hb_006295_020 Hb_006295_020 Hb_003805_050--Hb_006295_020 Hb_001133_030 Hb_001133_030 Hb_000083_070--Hb_001133_030 Hb_000925_090 Hb_000925_090 Hb_000083_070--Hb_000925_090 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_012244_020 Hb_012244_020 Hb_000083_070--Hb_012244_020 Hb_005348_010--Hb_000329_750 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005488_170 Hb_005488_170 Hb_005348_010--Hb_005488_170 Hb_002909_120 Hb_002909_120 Hb_005348_010--Hb_002909_120 Hb_000329_750--Hb_006295_020 Hb_000329_750--Hb_005488_170 Hb_000329_750--Hb_003203_030 Hb_000329_750--Hb_002909_120 Hb_002095_070--Hb_000261_150 Hb_003211_040 Hb_003211_040 Hb_002095_070--Hb_003211_040 Hb_002095_070--Hb_000083_070 Hb_000836_020 Hb_000836_020 Hb_002095_070--Hb_000836_020 Hb_001085_030 Hb_001085_030 Hb_002095_070--Hb_001085_030 Hb_007575_080 Hb_007575_080 Hb_024185_010--Hb_007575_080 Hb_000720_150 Hb_000720_150 Hb_024185_010--Hb_000720_150 Hb_006117_080 Hb_006117_080 Hb_024185_010--Hb_006117_080 Hb_008053_040 Hb_008053_040 Hb_024185_010--Hb_008053_040 Hb_000661_130 Hb_000661_130 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130 Hb_006295_020--Hb_000083_070 Hb_000041_090 Hb_000041_090 Hb_006295_020--Hb_000041_090 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65236 3.96198 1.35249 0.775003 2.51547 1.98901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.803276 0.908524 1.56876 2.02136 3.9119

CAGE analysis