Hb_001085_030

Information

Type -
Description -
Location Contig1085: 15534-20049
Sequence    

Annotation

kegg
ID tcc:TCM_014940
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1
nr
ID XP_007038409.1
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9LVA2
description Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1
trembl
ID A0A061G037
description Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02548: 17267-17560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_030 0.0 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
2 Hb_001133_030 0.0710606977 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
3 Hb_000261_150 0.0775950218 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000925_090 0.0791626668 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
5 Hb_000083_070 0.0792058756 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
6 Hb_007120_060 0.0800240526 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
7 Hb_014497_020 0.0811347662 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
8 Hb_009476_090 0.0821692543 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
9 Hb_002095_070 0.0842563393 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
10 Hb_001662_180 0.0869490526 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
11 Hb_009486_170 0.0886269599 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
12 Hb_000003_410 0.0898788705 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
13 Hb_065408_010 0.0911807441 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
14 Hb_000836_020 0.0920154533 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
15 Hb_000703_130 0.093144256 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_001726_100 0.0939215822 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
17 Hb_001124_050 0.0942598422 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
18 Hb_000434_070 0.0960505444 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
19 Hb_003805_050 0.096118279 - - -
20 Hb_188063_010 0.0975333518 - - hypothetical protein RCOM_1469330 [Ricinus communis]

Gene co-expression network

sample Hb_001085_030 Hb_001085_030 Hb_001133_030 Hb_001133_030 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_000925_090 Hb_000925_090 Hb_001085_030--Hb_000925_090 Hb_000083_070 Hb_000083_070 Hb_001085_030--Hb_000083_070 Hb_007120_060 Hb_007120_060 Hb_001085_030--Hb_007120_060 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020 Hb_001133_030--Hb_000925_090 Hb_009486_170 Hb_009486_170 Hb_001133_030--Hb_009486_170 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_001699_280 Hb_001699_280 Hb_000261_150--Hb_001699_280 Hb_188063_010 Hb_188063_010 Hb_000261_150--Hb_188063_010 Hb_000261_150--Hb_000083_070 Hb_005186_040 Hb_005186_040 Hb_000261_150--Hb_005186_040 Hb_000025_710 Hb_000025_710 Hb_000261_150--Hb_000025_710 Hb_002095_070 Hb_002095_070 Hb_000261_150--Hb_002095_070 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000925_090--Hb_000083_070 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_000083_070--Hb_001133_030 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000083_070--Hb_000025_710 Hb_000083_070--Hb_012244_020 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_007120_060--Hb_001726_100 Hb_007120_060--Hb_000925_090 Hb_007120_060--Hb_001133_030 Hb_007120_060--Hb_000003_410 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_014497_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20718 3.70786 1.07452 1.00938 1.51668 1.80581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.532785 0.682541 0.710413 2.07896 3.19101

CAGE analysis