Hb_007120_060

Information

Type -
Description -
Location Contig7120: 53916-59454
Sequence    

Annotation

kegg
ID rcu:RCOM_0386800
description spliceosomal protein sap, putative
nr
ID XP_012073366.1
description PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
swissprot
ID Q921M3
description Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
trembl
ID A0A067LMR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06631 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor 3b subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55332: 53899-59388 , PASA_asmbl_55333: 53899-59388 , PASA_asmbl_55334: 57849-59319 , PASA_asmbl_55335: 57897-59319 , PASA_asmbl_55336: 57874-58066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_060 0.0 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
2 Hb_065408_010 0.0634215934 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
3 Hb_001726_100 0.067578617 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
4 Hb_000925_090 0.0720552576 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
5 Hb_001133_030 0.0761188616 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
6 Hb_001085_030 0.0800240526 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
7 Hb_000003_410 0.0820307779 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
8 Hb_000363_300 0.0834898693 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
9 Hb_011609_150 0.0847619372 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
10 Hb_014497_020 0.0849095747 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
11 Hb_001124_050 0.0895927175 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
12 Hb_001726_050 0.0907654102 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
13 Hb_012244_020 0.0910488694 - - calpain, putative [Ricinus communis]
14 Hb_013459_010 0.0917148046 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
15 Hb_006031_010 0.0919031727 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
16 Hb_009486_090 0.0924735328 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000934_210 0.0941193665 - - suppressor of ty, putative [Ricinus communis]
18 Hb_001662_180 0.0952614328 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
19 Hb_000008_410 0.0963098556 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
20 Hb_003895_040 0.096871019 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007120_060 Hb_007120_060 Hb_065408_010 Hb_065408_010 Hb_007120_060--Hb_065408_010 Hb_001726_100 Hb_001726_100 Hb_007120_060--Hb_001726_100 Hb_000925_090 Hb_000925_090 Hb_007120_060--Hb_000925_090 Hb_001133_030 Hb_001133_030 Hb_007120_060--Hb_001133_030 Hb_001085_030 Hb_001085_030 Hb_007120_060--Hb_001085_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_005211_020 Hb_005211_020 Hb_065408_010--Hb_005211_020 Hb_002636_110 Hb_002636_110 Hb_065408_010--Hb_002636_110 Hb_065408_010--Hb_001726_100 Hb_065408_010--Hb_000925_090 Hb_065408_010--Hb_001085_030 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_000925_090--Hb_001133_030 Hb_000925_090--Hb_012244_020 Hb_002600_060 Hb_002600_060 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001133_030--Hb_009486_170 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_001085_030--Hb_000925_090 Hb_001085_030--Hb_000083_070 Hb_014497_020 Hb_014497_020 Hb_001085_030--Hb_014497_020 Hb_000958_050 Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22799 18.2111 8.4073 6.84408 10.236 11.2343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07314 3.4432 5.21401 17.5118 23.2014

CAGE analysis