Hb_001726_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig1726: 95832-113032
Sequence    

Annotation

kegg
ID tcc:TCM_006789
description Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1
nr
ID XP_007042035.1
description Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9SD34
description Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3
trembl
ID A0A061E0K8
description Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 OS=Theobroma cacao GN=TCM_006789 PE=4 SV=1
Gene Ontology
ID GO:0016740
description zinc finger ccch domain-containing protein 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16313: 95788-112789 , PASA_asmbl_16317: 95788-157105 , PASA_asmbl_16319: 112891-113006 , PASA_asmbl_16324: 97680-147325 , PASA_asmbl_16325: 98414-98684 , PASA_asmbl_16328: 100410-100547 , PASA_asmbl_16330: 95963-142836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_050 0.0 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
2 Hb_001726_100 0.068549002 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
3 Hb_000656_060 0.074417581 - - DNA binding protein, putative [Ricinus communis]
4 Hb_005488_170 0.0759422517 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
5 Hb_099270_030 0.0784015515 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
6 Hb_005186_040 0.0826758506 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
7 Hb_002909_120 0.085928718 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
8 Hb_005348_010 0.0880861614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002521_020 0.0885086758 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_000925_090 0.088931131 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
11 Hb_007120_060 0.0907654102 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
12 Hb_001133_030 0.0919989523 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
13 Hb_003805_050 0.0931241886 - - -
14 Hb_000329_750 0.0948523116 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
15 Hb_012244_020 0.0953717663 - - calpain, putative [Ricinus communis]
16 Hb_000083_070 0.0954070908 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
17 Hb_000261_150 0.0954770472 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010998_020 0.0991971391 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
19 Hb_013459_010 0.101120694 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
20 Hb_001085_030 0.102098698 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001726_050 Hb_001726_050 Hb_001726_100 Hb_001726_100 Hb_001726_050--Hb_001726_100 Hb_000656_060 Hb_000656_060 Hb_001726_050--Hb_000656_060 Hb_005488_170 Hb_005488_170 Hb_001726_050--Hb_005488_170 Hb_099270_030 Hb_099270_030 Hb_001726_050--Hb_099270_030 Hb_005186_040 Hb_005186_040 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_000363_300 Hb_000363_300 Hb_001726_100--Hb_000363_300 Hb_001726_100--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_001726_100--Hb_012244_020 Hb_000656_060--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_000656_060--Hb_011021_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_012098_070 Hb_012098_070 Hb_099270_030--Hb_012098_070 Hb_156279_010 Hb_156279_010 Hb_099270_030--Hb_156279_010 Hb_099270_030--Hb_005488_170 Hb_000714_040 Hb_000714_040 Hb_099270_030--Hb_000714_040 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.53525 26.1378 7.25756 7.95508 14.2169 14.2872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.04667 7.12388 11.9466 19.3507 34.6923

CAGE analysis