Hb_099270_030

Information

Type transcription factor
Description TF Family: PHD
Location Contig99270: 57795-67977
Sequence    

Annotation

kegg
ID rcu:RCOM_0893560
description chromodomain helicase DNA binding protein, putative (EC:2.7.11.1)
nr
ID XP_012080911.1
description PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
swissprot
ID F4KBP5
description Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1
trembl
ID A0A067K2V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15265 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromatin remodeling 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64796: 57928-59712 , PASA_asmbl_64797: 61147-61674 , PASA_asmbl_64798: 61707-62815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099270_030 0.0 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
2 Hb_001726_050 0.0784015515 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
3 Hb_005348_010 0.0828804722 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012098_070 0.0864097906 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
5 Hb_156279_010 0.0871187437 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
6 Hb_005488_170 0.0871609492 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
7 Hb_000714_040 0.0880456957 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
8 Hb_003506_050 0.0904438116 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000925_090 0.0940247718 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
10 Hb_000329_750 0.0949691416 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
11 Hb_007545_130 0.0951589875 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
12 Hb_000815_170 0.0959316949 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
13 Hb_013459_010 0.0965288349 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
14 Hb_001726_100 0.0990478188 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
15 Hb_005801_020 0.1019531125 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
16 Hb_002909_120 0.102350226 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
17 Hb_000589_380 0.1025962125 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
18 Hb_003119_080 0.1030251416 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
19 Hb_006295_020 0.1034178523 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
20 Hb_011609_150 0.1039139015 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]

Gene co-expression network

sample Hb_099270_030 Hb_099270_030 Hb_001726_050 Hb_001726_050 Hb_099270_030--Hb_001726_050 Hb_005348_010 Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_012098_070 Hb_012098_070 Hb_099270_030--Hb_012098_070 Hb_156279_010 Hb_156279_010 Hb_099270_030--Hb_156279_010 Hb_005488_170 Hb_005488_170 Hb_099270_030--Hb_005488_170 Hb_000714_040 Hb_000714_040 Hb_099270_030--Hb_000714_040 Hb_001726_100 Hb_001726_100 Hb_001726_050--Hb_001726_100 Hb_000656_060 Hb_000656_060 Hb_001726_050--Hb_000656_060 Hb_001726_050--Hb_005488_170 Hb_005186_040 Hb_005186_040 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005348_010--Hb_005488_170 Hb_005348_010--Hb_002909_120 Hb_012098_070--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_012098_070--Hb_000815_170 Hb_003607_070 Hb_003607_070 Hb_012098_070--Hb_003607_070 Hb_005801_020 Hb_005801_020 Hb_012098_070--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_012098_070--Hb_005250_030 Hb_156279_010--Hb_000815_170 Hb_156279_010--Hb_005801_020 Hb_156279_010--Hb_005250_030 Hb_006618_050 Hb_006618_050 Hb_156279_010--Hb_006618_050 Hb_156279_010--Hb_006295_020 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_000714_040--Hb_005488_170 Hb_000714_040--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_000714_040--Hb_013459_010 Hb_003119_080 Hb_003119_080 Hb_000714_040--Hb_003119_080 Hb_000714_040--Hb_005348_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94079 5.0683 1.38014 2.24651 3.06961 3.69016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24347 1.15718 3.14765 4.58022 8.60538

CAGE analysis