Hb_013459_010

Information

Type -
Description -
Location Contig13459: 20268-23650
Sequence    

Annotation

kegg
ID csv:101227202
description uncharacterized LOC101227202
nr
ID XP_012570254.1
description PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID A0A061GW85
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041427 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09767: 21409-22321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013459_010 0.0 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
2 Hb_007545_130 0.0558634876 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
3 Hb_005250_030 0.0783606831 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
4 Hb_000925_090 0.0824663365 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
5 Hb_135572_010 0.0827486801 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
6 Hb_000714_040 0.082930787 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
7 Hb_000815_170 0.0875694415 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
8 Hb_005701_130 0.0890959331 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
9 Hb_003506_050 0.0900898571 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007120_060 0.0917148046 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
11 Hb_000363_300 0.0941137987 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
12 Hb_005488_170 0.0944810655 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
13 Hb_001133_030 0.0949287256 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
14 Hb_099270_030 0.0965288349 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
15 Hb_002600_060 0.0974970972 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
16 Hb_001377_100 0.0982799884 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_001726_100 0.0992092291 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
18 Hb_005211_020 0.0995488205 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
19 Hb_001726_050 0.101120694 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
20 Hb_156279_010 0.1032317263 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_013459_010 Hb_013459_010 Hb_007545_130 Hb_007545_130 Hb_013459_010--Hb_007545_130 Hb_005250_030 Hb_005250_030 Hb_013459_010--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_000815_170 Hb_000815_170 Hb_013459_010--Hb_000815_170 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_007545_130--Hb_005250_030 Hb_007545_130--Hb_000925_090 Hb_002600_060 Hb_002600_060 Hb_007545_130--Hb_002600_060 Hb_005211_020 Hb_005211_020 Hb_007545_130--Hb_005211_020 Hb_005250_030--Hb_000815_170 Hb_006618_050 Hb_006618_050 Hb_005250_030--Hb_006618_050 Hb_156279_010 Hb_156279_010 Hb_005250_030--Hb_156279_010 Hb_005250_030--Hb_003506_050 Hb_001133_030 Hb_001133_030 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_002600_060 Hb_000083_070 Hb_000083_070 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_005488_170 Hb_005488_170 Hb_000714_040--Hb_005488_170 Hb_000714_040--Hb_000815_170 Hb_003119_080 Hb_003119_080 Hb_000714_040--Hb_003119_080 Hb_099270_030 Hb_099270_030 Hb_000714_040--Hb_099270_030 Hb_005348_010 Hb_005348_010 Hb_000714_040--Hb_005348_010 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_000815_170--Hb_135572_010 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16647 2.56297 1.71873 1.47264 1.7859 2.5299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.59529 0.702376 1.55229 2.45372 4.97262

CAGE analysis