Hb_156279_010

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig156279: 49940-70814
Sequence    

Annotation

kegg
ID cit:102627530
description uncharacterized LOC102627530
nr
ID XP_012080894.1
description PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067KFF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16953 PE=4 SV=1
Gene Ontology
ID GO:0046872
description transcription factor jumonji domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13566: 50005-52389 , PASA_asmbl_13567: 52465-56241 , PASA_asmbl_13568: 56250-66054 , PASA_asmbl_13569: 66099-70767 , PASA_asmbl_13570: 69531-69903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156279_010 0.0 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
2 Hb_000815_170 0.0526986794 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_005801_020 0.0612068707 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
4 Hb_005250_030 0.0852396337 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
5 Hb_099270_030 0.0871187437 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
6 Hb_006618_050 0.0901557879 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
7 Hb_006295_020 0.0928793328 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
8 Hb_012098_070 0.0946505245 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
9 Hb_135572_010 0.0950639916 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
10 Hb_000925_090 0.0957556843 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
11 Hb_000329_750 0.0979505997 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
12 Hb_007545_130 0.0992539325 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
13 Hb_005348_010 0.0999020446 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003124_100 0.1008874909 - - -
15 Hb_003506_050 0.1012749249 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_018118_010 0.102874398 - - DNA polymerase I, putative [Ricinus communis]
17 Hb_013459_010 0.1032317263 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
18 Hb_001726_050 0.1033351037 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
19 Hb_001726_100 0.1040963246 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
20 Hb_009252_040 0.1061322474 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_156279_010 Hb_156279_010 Hb_000815_170 Hb_000815_170 Hb_156279_010--Hb_000815_170 Hb_005801_020 Hb_005801_020 Hb_156279_010--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_156279_010--Hb_005250_030 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_006618_050 Hb_006618_050 Hb_156279_010--Hb_006618_050 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_005801_020--Hb_135572_010 Hb_000661_030 Hb_000661_030 Hb_005801_020--Hb_000661_030 Hb_012098_070 Hb_012098_070 Hb_005801_020--Hb_012098_070 Hb_005801_020--Hb_006618_050 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_005250_030--Hb_006618_050 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050 Hb_001726_050 Hb_001726_050 Hb_099270_030--Hb_001726_050 Hb_005348_010 Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_099270_030--Hb_012098_070 Hb_005488_170 Hb_005488_170 Hb_099270_030--Hb_005488_170 Hb_099270_030--Hb_000714_040 Hb_006618_050--Hb_003506_050 Hb_006618_050--Hb_007545_130 Hb_006618_050--Hb_000815_170 Hb_002368_070 Hb_002368_070 Hb_006618_050--Hb_002368_070 Hb_006295_020--Hb_005348_010 Hb_000083_070 Hb_000083_070 Hb_006295_020--Hb_000083_070 Hb_000329_750 Hb_000329_750 Hb_006295_020--Hb_000329_750 Hb_000041_090 Hb_000041_090 Hb_006295_020--Hb_000041_090 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_006295_020--Hb_003203_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58673 10.2044 4.8393 4.72947 8.71069 11.5987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.22567 4.69085 6.16506 13.5212 23.2518

CAGE analysis