Hb_000661_030

Information

Type -
Description -
Location Contig661: 25658-30967
Sequence    

Annotation

kegg
ID rcu:RCOM_1020610
description hypothetical protein
nr
ID XP_012092654.1
description PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06415 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring u-box superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52944: 27839-28502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_030 0.0 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
2 Hb_000679_020 0.0671613718 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_001259_020 0.0727462981 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
4 Hb_000027_190 0.0787968568 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
5 Hb_188126_010 0.0798688159 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
6 Hb_000815_170 0.0841981151 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_000906_100 0.0847871941 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
8 Hb_000864_030 0.0869480362 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
9 Hb_000005_190 0.0872712761 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
10 Hb_018118_010 0.0882554618 - - DNA polymerase I, putative [Ricinus communis]
11 Hb_003020_030 0.0888749471 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
12 Hb_001498_010 0.0891254539 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
13 Hb_005801_020 0.089794438 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_000261_060 0.0902362655 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
15 Hb_010710_070 0.0909341704 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
16 Hb_008387_020 0.0923024994 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
17 Hb_008024_030 0.09234866 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
18 Hb_007441_130 0.0936722167 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001008_120 0.0950256305 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
20 Hb_000041_090 0.0961034738 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_030 Hb_000661_030 Hb_000679_020 Hb_000679_020 Hb_000661_030--Hb_000679_020 Hb_001259_020 Hb_001259_020 Hb_000661_030--Hb_001259_020 Hb_000027_190 Hb_000027_190 Hb_000661_030--Hb_000027_190 Hb_188126_010 Hb_188126_010 Hb_000661_030--Hb_188126_010 Hb_000815_170 Hb_000815_170 Hb_000661_030--Hb_000815_170 Hb_000906_100 Hb_000906_100 Hb_000661_030--Hb_000906_100 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000679_020--Hb_000906_100 Hb_003203_030 Hb_003203_030 Hb_001259_020--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_001259_020--Hb_000816_100 Hb_000331_560 Hb_000331_560 Hb_001259_020--Hb_000331_560 Hb_000627_250 Hb_000627_250 Hb_001259_020--Hb_000627_250 Hb_001498_010 Hb_001498_010 Hb_001259_020--Hb_001498_010 Hb_000027_190--Hb_000679_020 Hb_001435_030 Hb_001435_030 Hb_000027_190--Hb_001435_030 Hb_000005_190 Hb_000005_190 Hb_000027_190--Hb_000005_190 Hb_010710_070 Hb_010710_070 Hb_000027_190--Hb_010710_070 Hb_007441_130 Hb_007441_130 Hb_000027_190--Hb_007441_130 Hb_188126_010--Hb_000005_190 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_007805_010 Hb_007805_010 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_156279_010 Hb_156279_010 Hb_000815_170--Hb_156279_010 Hb_005801_020 Hb_005801_020 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_005250_030 Hb_005250_030 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_000834_200 Hb_000834_200 Hb_000906_100--Hb_000834_200 Hb_001999_290 Hb_001999_290 Hb_000906_100--Hb_001999_290 Hb_000906_100--Hb_001498_010 Hb_000473_110 Hb_000473_110 Hb_000906_100--Hb_000473_110 Hb_000906_100--Hb_003203_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09315 6.43953 5.26981 5.0219 10.6435 8.97554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15442 4.50089 6.60823 8.70522 14.9759

CAGE analysis