Hb_000005_190

Information

Type -
Description -
Location Contig5: 209416-212760
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01130g
description hypothetical protein
nr
ID KDP43971.1
description hypothetical protein JCGZ_05438 [Jatropha curcas]
swissprot
ID Q42572
description DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2
trembl
ID A0A067L673
description DNA ligase OS=Jatropha curcas GN=JCGZ_05438 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna ligase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45695: 209562-210824 , PASA_asmbl_45696: 212268-239347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_190 0.0 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
2 Hb_188126_010 0.0667275883 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
3 Hb_010710_070 0.0745892475 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
4 Hb_012733_030 0.0814674098 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
5 Hb_003544_140 0.0826856834 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
6 Hb_002095_010 0.084143074 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
7 Hb_000207_180 0.0846838526 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
8 Hb_000661_030 0.0872712761 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
9 Hb_004963_030 0.0883673488 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_001442_040 0.090923483 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
11 Hb_007426_110 0.091030722 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
12 Hb_000027_190 0.0911241252 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
13 Hb_028912_050 0.0913636976 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
14 Hb_002849_100 0.0917637269 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
15 Hb_018118_010 0.0924884781 - - DNA polymerase I, putative [Ricinus communis]
16 Hb_000679_020 0.0931461458 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
17 Hb_007805_010 0.0938635994 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
18 Hb_009270_020 0.0951313668 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
19 Hb_008024_030 0.0963417199 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
20 Hb_003020_030 0.0973514612 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_000005_190 Hb_000005_190 Hb_188126_010 Hb_188126_010 Hb_000005_190--Hb_188126_010 Hb_010710_070 Hb_010710_070 Hb_000005_190--Hb_010710_070 Hb_012733_030 Hb_012733_030 Hb_000005_190--Hb_012733_030 Hb_003544_140 Hb_003544_140 Hb_000005_190--Hb_003544_140 Hb_002095_010 Hb_002095_010 Hb_000005_190--Hb_002095_010 Hb_000207_180 Hb_000207_180 Hb_000005_190--Hb_000207_180 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_000661_030 Hb_000661_030 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_007805_010 Hb_007805_010 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_004963_030 Hb_004963_030 Hb_010710_070--Hb_004963_030 Hb_028912_050 Hb_028912_050 Hb_010710_070--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_007380_060 Hb_007380_060 Hb_012733_030--Hb_007380_060 Hb_002600_150 Hb_002600_150 Hb_012733_030--Hb_002600_150 Hb_007426_110 Hb_007426_110 Hb_012733_030--Hb_007426_110 Hb_012733_030--Hb_001442_040 Hb_000008_290 Hb_000008_290 Hb_012733_030--Hb_000008_290 Hb_000053_040 Hb_000053_040 Hb_012733_030--Hb_000053_040 Hb_012760_100 Hb_012760_100 Hb_003544_140--Hb_012760_100 Hb_011228_010 Hb_011228_010 Hb_003544_140--Hb_011228_010 Hb_007994_010 Hb_007994_010 Hb_003544_140--Hb_007994_010 Hb_004182_050 Hb_004182_050 Hb_003544_140--Hb_004182_050 Hb_003544_140--Hb_002849_100 Hb_000035_170 Hb_000035_170 Hb_003544_140--Hb_000035_170 Hb_002095_010--Hb_010710_070 Hb_002095_010--Hb_028912_050 Hb_006660_010 Hb_006660_010 Hb_002095_010--Hb_006660_010 Hb_000739_310 Hb_000739_310 Hb_002095_010--Hb_000739_310 Hb_002095_010--Hb_004963_030 Hb_009270_020 Hb_009270_020 Hb_000207_180--Hb_009270_020 Hb_000441_120 Hb_000441_120 Hb_000207_180--Hb_000441_120 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_006420_040 Hb_006420_040 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.87756 5.29415 5.29285 3.21216 7.61312 9.86602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.61431 3.56814 6.67283 9.41263 10.7669

CAGE analysis