Hb_007805_010

Information

Type -
Description -
Location Contig7805: 6301-18400
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04900g
description hypothetical protein
nr
ID XP_012072737.1
description PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
swissprot
ID Q08965
description Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
trembl
ID A0A067KZM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06352 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ribosome biogenesis protein bms1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57951: 6318-18345 , PASA_asmbl_57952: 6350-8342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007805_010 0.0 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
2 Hb_002551_070 0.0765129249 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
3 Hb_002974_060 0.0840589399 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
4 Hb_005679_050 0.0847547229 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000470_080 0.0856595986 - - Caldesmon, putative [Ricinus communis]
6 Hb_000236_310 0.0878602219 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
7 Hb_188126_010 0.0883147431 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
8 Hb_048476_180 0.0905961475 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
9 Hb_010710_070 0.09263634 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
10 Hb_001449_040 0.093296951 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
11 Hb_000005_190 0.0938635994 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
12 Hb_002095_010 0.0942616778 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
13 Hb_002271_030 0.0950336472 - - Vacuolar protein sorting protein, putative [Ricinus communis]
14 Hb_002493_020 0.0966478531 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
15 Hb_002600_140 0.1000688972 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
16 Hb_016898_010 0.1009947714 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_005901_020 0.1010174892 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
18 Hb_003362_070 0.1022514615 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_012733_030 0.1038601472 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
20 Hb_000429_120 0.103943253 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]

Gene co-expression network

sample Hb_007805_010 Hb_007805_010 Hb_002551_070 Hb_002551_070 Hb_007805_010--Hb_002551_070 Hb_002974_060 Hb_002974_060 Hb_007805_010--Hb_002974_060 Hb_005679_050 Hb_005679_050 Hb_007805_010--Hb_005679_050 Hb_000470_080 Hb_000470_080 Hb_007805_010--Hb_000470_080 Hb_000236_310 Hb_000236_310 Hb_007805_010--Hb_000236_310 Hb_188126_010 Hb_188126_010 Hb_007805_010--Hb_188126_010 Hb_003623_030 Hb_003623_030 Hb_002551_070--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_002551_070--Hb_002974_060 Hb_003966_030 Hb_003966_030 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_001617_060 Hb_001617_060 Hb_005679_050--Hb_001617_060 Hb_005679_050--Hb_003966_030 Hb_067345_010 Hb_067345_010 Hb_005679_050--Hb_067345_010 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120 Hb_000470_080--Hb_005679_050 Hb_000470_080--Hb_002974_060 Hb_011310_160 Hb_011310_160 Hb_000470_080--Hb_011310_160 Hb_011928_020 Hb_011928_020 Hb_000470_080--Hb_011928_020 Hb_003294_090 Hb_003294_090 Hb_000470_080--Hb_003294_090 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_000005_190 Hb_000005_190 Hb_188126_010--Hb_000005_190 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_000661_030 Hb_000661_030 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7336 12.8567 8.79485 9.16706 19.0727 38.4861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5383 12.1343 17.4692 24.7099 23.8387

CAGE analysis