Hb_000236_310

Information

Type -
Description -
Location Contig236: 242536-245497
Sequence    

Annotation

kegg
ID mdm:103422499
description heterogeneous nuclear ribonucleoprotein 1-like
nr
ID XP_008358788.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID M5WIA4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006963mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24704: 242594-245177 , PASA_asmbl_24705: 243884-245177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_310 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
2 Hb_005228_130 0.0697017447 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001449_040 0.0719123253 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
4 Hb_000613_050 0.0809545949 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
5 Hb_011716_020 0.0850820458 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
6 Hb_000127_040 0.0857751737 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_002600_140 0.0859455736 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
8 Hb_001199_100 0.0866156672 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
9 Hb_002974_060 0.0867209492 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
10 Hb_007805_010 0.0878602219 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
11 Hb_005901_020 0.087860695 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
12 Hb_004935_030 0.0900470751 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
13 Hb_002493_020 0.0910116065 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_017358_040 0.0910668069 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
15 Hb_000038_080 0.0911701681 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
16 Hb_000083_160 0.0915730691 - - Cell division cycle protein, putative [Ricinus communis]
17 Hb_005679_050 0.0919639814 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001496_070 0.0935132288 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
19 Hb_000271_090 0.0939033928 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_003362_070 0.0939070648 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_310 Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_002600_140 Hb_002600_140 Hb_000236_310--Hb_002600_140 Hb_005228_130--Hb_002600_140 Hb_000271_090 Hb_000271_090 Hb_005228_130--Hb_000271_090 Hb_017358_040 Hb_017358_040 Hb_005228_130--Hb_017358_040 Hb_009476_040 Hb_009476_040 Hb_005228_130--Hb_009476_040 Hb_005228_130--Hb_011716_020 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020 Hb_000613_050--Hb_001343_040 Hb_000592_030 Hb_000592_030 Hb_000613_050--Hb_000592_030 Hb_000613_050--Hb_000008_290 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_002815_030 Hb_002815_030 Hb_000613_050--Hb_002815_030 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_002600_140--Hb_002974_060 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.447 32.2527 14.3485 36.793 33.7895 78.452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7313 24.3107 31.8032 52.3137 41.1826

CAGE analysis