Hb_005228_130

Information

Type -
Description -
Location Contig5228: 118295-121054
Sequence    

Annotation

kegg
ID rcu:RCOM_0320940
description hypothetical protein
nr
ID XP_012071288.1
description PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID O49429
description Multiple organellar RNA editing factor 1, mitochondrial OS=Arabidopsis thaliana GN=MORF1 PE=1 SV=1
trembl
ID A0A067KV27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46888: 118780-120996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_130 0.0 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000236_310 0.0697017447 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
3 Hb_002600_140 0.091004704 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
4 Hb_000271_090 0.1022605573 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_017358_040 0.102827787 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
6 Hb_009476_040 0.1037289515 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011716_020 0.1047938296 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
8 Hb_000084_120 0.1051593202 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
9 Hb_002974_060 0.105992617 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
10 Hb_146109_010 0.1085268597 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001449_040 0.1098553466 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
12 Hb_007805_010 0.1100205815 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
13 Hb_000613_050 0.1104749231 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
14 Hb_003916_010 0.1131183509 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
15 Hb_000083_160 0.1131376153 - - Cell division cycle protein, putative [Ricinus communis]
16 Hb_162603_010 0.113418344 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001199_100 0.1156883018 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
18 Hb_001034_070 0.1176306026 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000038_080 0.1188171167 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
20 Hb_022400_010 0.1194957847 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]

Gene co-expression network

sample Hb_005228_130 Hb_005228_130 Hb_000236_310 Hb_000236_310 Hb_005228_130--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_005228_130--Hb_002600_140 Hb_000271_090 Hb_000271_090 Hb_005228_130--Hb_000271_090 Hb_017358_040 Hb_017358_040 Hb_005228_130--Hb_017358_040 Hb_009476_040 Hb_009476_040 Hb_005228_130--Hb_009476_040 Hb_011716_020 Hb_011716_020 Hb_005228_130--Hb_011716_020 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_031284_040 Hb_031284_040 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_033834_060 Hb_033834_060 Hb_000271_090--Hb_033834_060 Hb_000069_120 Hb_000069_120 Hb_017358_040--Hb_000069_120 Hb_001761_130 Hb_001761_130 Hb_017358_040--Hb_001761_130 Hb_071130_010 Hb_071130_010 Hb_017358_040--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_003060_060 Hb_003060_060 Hb_017358_040--Hb_003060_060 Hb_000183_020 Hb_000183_020 Hb_009476_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_009476_040--Hb_000922_370 Hb_025194_040 Hb_025194_040 Hb_009476_040--Hb_025194_040 Hb_074969_010 Hb_074969_010 Hb_009476_040--Hb_074969_010 Hb_007426_130 Hb_007426_130 Hb_009476_040--Hb_007426_130 Hb_002784_110 Hb_002784_110 Hb_009476_040--Hb_002784_110 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_011716_020--Hb_002974_060 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.4496 48.9584 16.0059 49.7501 51.4703 118.694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7958 49.1974 35.8061 94.4063 59.3697

CAGE analysis