Hb_003060_060

Information

Type -
Description -
Location Contig3060: 35504-49585
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06020g
description POPTRDRAFT_821436; transducin family protein
nr
ID XP_012065636.1
description PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
swissprot
ID Q8L611
description Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana GN=SEC31B PE=1 SV=1
trembl
ID A0A067LGB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16897 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein transport protein sec31 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32356: 35550-49807 , PASA_asmbl_32357: 35552-47511
cDNA
(Sanger)
(ID:Location)		 039_H15.ab1: 35552-38256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003060_060 0.0 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
2 Hb_000412_010 0.0513439272 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000395_070 0.0522740693 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
4 Hb_000230_260 0.0613966087 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
5 Hb_001529_040 0.0673181019 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
6 Hb_085781_020 0.0678609202 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_041327_010 0.0683026462 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
8 Hb_071130_010 0.0707684149 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
9 Hb_017358_040 0.0720362271 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_002170_050 0.0729440539 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
11 Hb_001343_040 0.0735298643 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
12 Hb_002639_080 0.0742435746 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
13 Hb_000556_220 0.0744879808 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
14 Hb_000592_030 0.0753502319 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_004676_010 0.0763555296 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
16 Hb_001550_060 0.0773234683 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
17 Hb_000740_100 0.0801572173 - - calpain, putative [Ricinus communis]
18 Hb_001195_320 0.0803946609 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
19 Hb_005656_040 0.0804863235 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_001913_060 0.0807016587 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003060_060 Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_000230_260 Hb_000230_260 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_085781_020 Hb_085781_020 Hb_003060_060--Hb_085781_020 Hb_041327_010 Hb_041327_010 Hb_003060_060--Hb_041327_010 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000412_010--Hb_000230_260 Hb_012395_140 Hb_012395_140 Hb_000395_070--Hb_012395_140 Hb_000740_100 Hb_000740_100 Hb_000395_070--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_000395_070--Hb_002815_030 Hb_000579_230 Hb_000579_230 Hb_000395_070--Hb_000579_230 Hb_071130_010 Hb_071130_010 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_000230_260--Hb_041327_010 Hb_000230_260--Hb_085781_020 Hb_001529_040--Hb_000395_070 Hb_001913_060 Hb_001913_060 Hb_001529_040--Hb_001913_060 Hb_000494_070 Hb_000494_070 Hb_001529_040--Hb_000494_070 Hb_002740_110 Hb_002740_110 Hb_001529_040--Hb_002740_110 Hb_001529_040--Hb_000740_100 Hb_085781_020--Hb_071130_010 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4986 22.0131 10.5135 15.4817 22.2408 24.6263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59778 9.44786 18.3089 27.6246 18.7384

CAGE analysis