Hb_000740_100

Information

Type -
Description -
Location Contig740: 88827-123389
Sequence    

Annotation

kegg
ID rcu:RCOM_0343760
description calpain, putative (EC:3.4.22.52)
nr
ID XP_002523419.1
description calpain, putative [Ricinus communis]
swissprot
ID Q8RVL2
description Calpain-type cysteine protease DEK1 OS=Arabidopsis thaliana GN=DEK1 PE=1 SV=1
trembl
ID B9SBQ0
description Calpain, putative OS=Ricinus communis GN=RCOM_0343760 PE=4 SV=1
Gene Ontology
ID GO:0005622
description calpain-type cysteine protease dek1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56362: 88965-98921 , PASA_asmbl_56363: 106108-107126 , PASA_asmbl_56364: 107302-107895 , PASA_asmbl_56365: 113368-117050 , PASA_asmbl_56366: 118632-121932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000740_100 0.0 - - calpain, putative [Ricinus communis]
2 Hb_002329_040 0.0504583842 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
3 Hb_000261_030 0.0505219504 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
4 Hb_000395_070 0.0519304767 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
5 Hb_008024_030 0.0593923577 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
6 Hb_011173_030 0.0603786718 - - pumilio, putative [Ricinus communis]
7 Hb_104061_020 0.0610179831 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_001623_480 0.0628872548 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
9 Hb_028487_010 0.0636833683 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
10 Hb_000579_230 0.0638566622 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
11 Hb_005402_040 0.0640833185 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
12 Hb_001343_040 0.0643508405 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
13 Hb_002107_070 0.066044567 - - hypothetical protein RCOM_1598630 [Ricinus communis]
14 Hb_002815_030 0.0663725594 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
15 Hb_012395_140 0.0664567591 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_000183_020 0.0675115647 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
17 Hb_001062_010 0.0677438289 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
18 Hb_002784_110 0.0702106191 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
19 Hb_148909_030 0.0714859725 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
20 Hb_004453_110 0.0723059188 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000740_100 Hb_000740_100 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_000261_030--Hb_002329_040 Hb_000395_070--Hb_012395_140 Hb_003060_060 Hb_003060_060 Hb_000395_070--Hb_003060_060 Hb_000412_010 Hb_000412_010 Hb_000395_070--Hb_000412_010 Hb_002815_030 Hb_002815_030 Hb_000395_070--Hb_002815_030 Hb_000579_230 Hb_000579_230 Hb_000395_070--Hb_000579_230 Hb_004920_090 Hb_004920_090 Hb_008024_030--Hb_004920_090 Hb_008024_030--Hb_027380_140 Hb_001623_480 Hb_001623_480 Hb_008024_030--Hb_001623_480 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_008024_030--Hb_012395_140 Hb_028487_010 Hb_028487_010 Hb_011173_030--Hb_028487_010 Hb_011173_030--Hb_104061_020 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_011173_030--Hb_001821_090 Hb_104061_020--Hb_002107_070 Hb_104061_020--Hb_000579_230 Hb_104061_020--Hb_002329_040 Hb_010053_030 Hb_010053_030 Hb_104061_020--Hb_010053_030 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15484 8.02548 4.43977 4.78755 9.13694 8.8581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21255 2.93864 4.06449 8.89024 7.02425

CAGE analysis