Hb_008024_030

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig8024: 19522-24051
Sequence    

Annotation

kegg
ID rcu:RCOM_0155810
description Uridylate kinase, putative
nr
ID XP_012090101.1
description PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
swissprot
ID Q3AV98
description Uridylate kinase OS=Synechococcus sp. (strain CC9902) GN=pyrH PE=3 SV=1
trembl
ID A0A067LCR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01538 PE=3 SV=1
Gene Ontology
ID GO:0005737
description PREDICTED: uncharacterized protein LOC105648348

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58870: 19835-24052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008024_030 0.0 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
2 Hb_004920_090 0.0470651939 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_027380_140 0.0495681712 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
4 Hb_001623_480 0.0529640087 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
5 Hb_000740_100 0.0593923577 - - calpain, putative [Ricinus communis]
6 Hb_000671_070 0.0642954061 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
7 Hb_012395_140 0.0644413806 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
8 Hb_000395_070 0.0648588025 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
9 Hb_002329_040 0.0651486152 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
10 Hb_012053_080 0.0707179731 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_000207_180 0.0720391207 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
12 Hb_000261_030 0.0723553657 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
13 Hb_000025_320 0.0730024961 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
14 Hb_001191_120 0.0736523666 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
15 Hb_000579_230 0.0743564632 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
16 Hb_089140_050 0.075328748 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
17 Hb_001379_110 0.0768912665 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
18 Hb_000035_170 0.0778656341 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
19 Hb_000914_120 0.0778871848 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
20 Hb_000429_220 0.0791407093 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008024_030 Hb_008024_030 Hb_004920_090 Hb_004920_090 Hb_008024_030--Hb_004920_090 Hb_027380_140 Hb_027380_140 Hb_008024_030--Hb_027380_140 Hb_001623_480 Hb_001623_480 Hb_008024_030--Hb_001623_480 Hb_000740_100 Hb_000740_100 Hb_008024_030--Hb_000740_100 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_012395_140 Hb_012395_140 Hb_008024_030--Hb_012395_140 Hb_004920_090--Hb_001623_480 Hb_000679_020 Hb_000679_020 Hb_004920_090--Hb_000679_020 Hb_000563_420 Hb_000563_420 Hb_004920_090--Hb_000563_420 Hb_000035_170 Hb_000035_170 Hb_004920_090--Hb_000035_170 Hb_000544_010 Hb_000544_010 Hb_004920_090--Hb_000544_010 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_000920_210 Hb_000920_210 Hb_001623_480--Hb_000920_210 Hb_001623_480--Hb_000740_100 Hb_000109_100 Hb_000109_100 Hb_001623_480--Hb_000109_100 Hb_104061_020 Hb_104061_020 Hb_001623_480--Hb_104061_020 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_000740_100--Hb_104061_020 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1762 13.1151 9.67697 7.95568 17.0135 15.2894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20795 4.80344 9.52694 13.379 14.602

CAGE analysis