Hb_007062_020

Information

Type -
Description -
Location Contig7062: 17154-29499
Sequence    

Annotation

kegg
ID rcu:RCOM_0814510
description gcn4-complementing protein, putative
nr
ID XP_002518820.1
description gcn4-complementing protein, putative [Ricinus communis]
swissprot
ID Q9C6C3
description ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1
trembl
ID B9RY53
description Gcn4-complementing protein, putative OS=Ricinus communis GN=RCOM_0814510 PE=4 SV=1
Gene Ontology
ID GO:0005737
description adp-ribosylation factor gtpase-activating protein agd4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55113: 18425-54671 , PASA_asmbl_55117: 29407-29557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007062_020 0.0 - - gcn4-complementing protein, putative [Ricinus communis]
2 Hb_000785_040 0.0546959518 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
3 Hb_027380_140 0.0600550839 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
4 Hb_001269_210 0.0626733823 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
5 Hb_000470_070 0.0695125028 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
6 Hb_009296_010 0.069872246 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
7 Hb_012053_080 0.0720054211 - - AP-2 complex subunit alpha, putative [Ricinus communis]
8 Hb_004935_030 0.0722505039 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
9 Hb_000035_410 0.0723860359 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
10 Hb_001268_280 0.0736566529 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007441_130 0.0755003868 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000008_290 0.0773793924 - - PREDICTED: protein SAND [Jatropha curcas]
13 Hb_006660_010 0.0777820605 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
14 Hb_004306_080 0.0780342388 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
15 Hb_012395_140 0.0790519909 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_001329_140 0.0794138052 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
17 Hb_000183_020 0.0798199334 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
18 Hb_002329_040 0.0808385494 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_004102_140 0.0809873156 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002493_020 0.081109946 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007062_020 Hb_007062_020 Hb_000785_040 Hb_000785_040 Hb_007062_020--Hb_000785_040 Hb_027380_140 Hb_027380_140 Hb_007062_020--Hb_027380_140 Hb_001269_210 Hb_001269_210 Hb_007062_020--Hb_001269_210 Hb_000470_070 Hb_000470_070 Hb_007062_020--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_007062_020--Hb_009296_010 Hb_012053_080 Hb_012053_080 Hb_007062_020--Hb_012053_080 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_001473_090 Hb_001473_090 Hb_000785_040--Hb_001473_090 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_027380_140--Hb_012053_080 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_001268_280 Hb_001268_280 Hb_001269_210--Hb_001268_280 Hb_000162_030 Hb_000162_030 Hb_001269_210--Hb_000162_030 Hb_002276_240 Hb_002276_240 Hb_001269_210--Hb_002276_240 Hb_012215_010 Hb_012215_010 Hb_001269_210--Hb_012215_010 Hb_002267_140 Hb_002267_140 Hb_001269_210--Hb_002267_140 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_009296_010--Hb_002078_100 Hb_009296_010--Hb_019654_040 Hb_009296_010--Hb_027380_140 Hb_009296_010--Hb_012053_080 Hb_001935_110 Hb_001935_110 Hb_009296_010--Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02241 5.88533 5.28537 6.05224 7.27147 10.7072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50965 3.28449 5.61116 6.04666 6.8657

CAGE analysis