Hb_000785_040

Information

Type -
Description -
Location Contig785: 46209-50071
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07880g
description POPTRDRAFT_562833; hypothetical protein
nr
ID XP_012065796.1
description PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HGN1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07880g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58074: 17849-47286 , PASA_asmbl_58078: 47442-48780 , PASA_asmbl_58079: 49624-49718 , PASA_asmbl_58080: 49727-50105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000785_040 0.0 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
2 Hb_007062_020 0.0546959518 - - gcn4-complementing protein, putative [Ricinus communis]
3 Hb_000470_070 0.0628159842 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
4 Hb_003966_030 0.0645415422 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
5 Hb_027380_140 0.0666325797 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_001025_080 0.0672046366 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
7 Hb_001473_090 0.0687279097 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
8 Hb_000035_410 0.0690059313 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
9 Hb_004306_080 0.072227886 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
10 Hb_012053_080 0.0726642431 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_004102_140 0.0733164755 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009296_010 0.0734544659 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
13 Hb_003044_020 0.0736385938 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
14 Hb_000183_020 0.0748012844 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
15 Hb_002078_100 0.0749548125 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
16 Hb_002329_040 0.0750280132 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_174821_010 0.0751889661 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
18 Hb_003362_070 0.0752157115 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_117552_010 0.078075644 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003656_180 0.0797809513 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]

Gene co-expression network

sample Hb_000785_040 Hb_000785_040 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_027380_140 Hb_027380_140 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_001473_090 Hb_001473_090 Hb_000785_040--Hb_001473_090 Hb_007062_020--Hb_027380_140 Hb_001269_210 Hb_001269_210 Hb_007062_020--Hb_001269_210 Hb_007062_020--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_007062_020--Hb_009296_010 Hb_012053_080 Hb_012053_080 Hb_007062_020--Hb_012053_080 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_027380_140--Hb_012053_080 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_004096_100 Hb_004096_100 Hb_001025_080--Hb_004096_100 Hb_001025_080--Hb_004102_140 Hb_000007_280 Hb_000007_280 Hb_001025_080--Hb_000007_280 Hb_001025_080--Hb_001473_090 Hb_001025_080--Hb_003044_020 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10616 5.98769 4.67021 6.49373 9.82614 13.2503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90729 3.06028 5.12242 7.1452 7.10867

CAGE analysis