Hb_028487_010

Information

Type -
Description -
Location Contig28487: 13602-38064
Sequence    

Annotation

kegg
ID rcu:RCOM_1143360
description hypothetical protein
nr
ID XP_012072284.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
swissprot
ID F4I4P3
description Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1
trembl
ID B9T6Z8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1143360 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 23 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29784: 13666-36556 , PASA_asmbl_29785: 20264-20648 , PASA_asmbl_29786: 36884-38000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
2 Hb_000307_210 0.0504435908 - - Transportin 1 isoform 1 [Theobroma cacao]
3 Hb_011173_030 0.0508438999 - - pumilio, putative [Ricinus communis]
4 Hb_001821_090 0.0576164613 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_002107_070 0.0586070393 - - hypothetical protein RCOM_1598630 [Ricinus communis]
6 Hb_000740_100 0.0636833683 - - calpain, putative [Ricinus communis]
7 Hb_005143_030 0.0644020571 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
8 Hb_000010_360 0.0648456493 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
9 Hb_104061_020 0.0691016321 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
10 Hb_003058_060 0.0715071711 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
11 Hb_000069_410 0.0740626245 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
12 Hb_148909_030 0.0754365483 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
13 Hb_001575_010 0.0759106111 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002784_010 0.077182406 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
15 Hb_000788_070 0.0786744892 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
16 Hb_001452_220 0.08040431 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
17 Hb_003498_120 0.0807135046 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
18 Hb_003284_030 0.0811706739 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
19 Hb_002329_040 0.081288441 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
20 Hb_004884_150 0.0813584068 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_028487_010 Hb_028487_010 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_011173_030 Hb_011173_030 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_000307_210--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000307_210--Hb_003058_060 Hb_000307_210--Hb_011173_030 Hb_010053_030 Hb_010053_030 Hb_000307_210--Hb_010053_030 Hb_000307_210--Hb_000740_100 Hb_011173_030--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_011173_030--Hb_104061_020 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_011173_030--Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_002107_070 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_000740_100--Hb_104061_020 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_005143_030--Hb_002107_070 Hb_005143_030--Hb_000369_130 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0843 19.965 7.19323 7.53159 17.6439 17.4328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.96212 5.80043 7.05829 19.3971 11.3585

CAGE analysis