Hb_001575_010

Information

Type -
Description -
Location Contig1575: 5217-22702
Sequence    

Annotation

kegg
ID vvi:100253825
description pumilio 5-like
nr
ID XP_012066755.1
description PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9C5E7
description Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 PE=1 SV=1
trembl
ID A0A067LDW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04536 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13738: 5334-22926 , PASA_asmbl_13740: 19075-19528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_010 0.0 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000069_410 0.0544392732 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
3 Hb_005143_030 0.0631172821 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
4 Hb_001821_090 0.0676362599 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_028487_010 0.0759106111 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
6 Hb_002170_050 0.0793303448 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
7 Hb_011173_030 0.0807079367 - - pumilio, putative [Ricinus communis]
8 Hb_001913_060 0.0825922105 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
9 Hb_000369_130 0.0845501441 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
10 Hb_002107_070 0.0852587155 - - hypothetical protein RCOM_1598630 [Ricinus communis]
11 Hb_003058_060 0.0859193676 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
12 Hb_023226_080 0.0889197379 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
13 Hb_000412_010 0.0903450111 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_001959_020 0.0907577684 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
15 Hb_002784_110 0.0912860597 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
16 Hb_000622_250 0.0915202456 - - atpob1, putative [Ricinus communis]
17 Hb_000684_290 0.0915463452 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
18 Hb_003284_030 0.0922792597 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
19 Hb_017358_040 0.0945766354 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
20 Hb_000307_210 0.0951050787 - - Transportin 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001575_010 Hb_001575_010 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001821_090 Hb_001821_090 Hb_001575_010--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_001575_010--Hb_028487_010 Hb_002170_050 Hb_002170_050 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030 Hb_000069_410--Hb_001821_090 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_002107_070 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_028487_010--Hb_011173_030 Hb_028487_010--Hb_002107_070 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_002170_050--Hb_003058_060 Hb_000412_010 Hb_000412_010 Hb_002170_050--Hb_000412_010 Hb_002097_050 Hb_002097_050 Hb_002170_050--Hb_002097_050 Hb_003060_060 Hb_003060_060 Hb_002170_050--Hb_003060_060 Hb_002170_050--Hb_002107_070 Hb_011173_030--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_011173_030--Hb_104061_020 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_011173_030--Hb_001821_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0375 34.7128 7.55474 15.6728 28.818 25.281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4075 10.5509 13.8681 33.6343 16.0535

CAGE analysis