Hb_002170_050

Information

Type -
Description -
Location Contig2170: 117025-124796
Sequence    

Annotation

kegg
ID rcu:RCOM_0098830
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012087911.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
swissprot
ID Q9SS81
description Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
trembl
ID A0A067JNU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25052 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pentatricopeptide repeat-containing protein at3g09060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22408: 117283-117834 , PASA_asmbl_22409: 118061-118293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
2 Hb_003058_060 0.0648333962 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
3 Hb_000412_010 0.0687837923 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002097_050 0.0720174954 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
5 Hb_003060_060 0.0729440539 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
6 Hb_002107_070 0.0773577107 - - hypothetical protein RCOM_1598630 [Ricinus communis]
7 Hb_001575_010 0.0793303448 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001821_090 0.0801413515 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
9 Hb_000369_130 0.0810489003 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
10 Hb_002784_110 0.0823885614 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_159558_010 0.0840862692 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_000183_020 0.0855225216 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_007818_010 0.0860990453 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
14 Hb_003206_130 0.0861078466 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
15 Hb_004884_150 0.0866538006 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
16 Hb_028487_010 0.0866642834 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
17 Hb_017358_040 0.0884830958 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
18 Hb_000740_100 0.0886301918 - - calpain, putative [Ricinus communis]
19 Hb_009175_020 0.0887084909 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
20 Hb_000395_070 0.0900310185 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002170_050 Hb_002170_050 Hb_003058_060 Hb_003058_060 Hb_002170_050--Hb_003058_060 Hb_000412_010 Hb_000412_010 Hb_002170_050--Hb_000412_010 Hb_002097_050 Hb_002097_050 Hb_002170_050--Hb_002097_050 Hb_003060_060 Hb_003060_060 Hb_002170_050--Hb_003060_060 Hb_002107_070 Hb_002107_070 Hb_002170_050--Hb_002107_070 Hb_001575_010 Hb_001575_010 Hb_002170_050--Hb_001575_010 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_003058_060--Hb_001821_090 Hb_003058_060--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000230_260 Hb_000230_260 Hb_000412_010--Hb_000230_260 Hb_000025_710 Hb_000025_710 Hb_002097_050--Hb_000025_710 Hb_027472_220 Hb_027472_220 Hb_002097_050--Hb_027472_220 Hb_188063_010 Hb_188063_010 Hb_002097_050--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_002097_050--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_002097_050--Hb_011202_020 Hb_003060_060--Hb_000395_070 Hb_003060_060--Hb_000230_260 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_085781_020 Hb_085781_020 Hb_003060_060--Hb_085781_020 Hb_041327_010 Hb_041327_010 Hb_003060_060--Hb_041327_010 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000069_410 Hb_000069_410 Hb_001575_010--Hb_000069_410 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001575_010--Hb_001821_090 Hb_001575_010--Hb_028487_010 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60348 2.80005 0.854654 1.46575 2.56825 2.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.797503 1.46427 1.4621 2.95723 2.04521

CAGE analysis