Hb_027472_220

Information

Type -
Description -
Location Contig27472: 160347-166844
Sequence    

Annotation

kegg
ID rcu:RCOM_1575060
description Nucleolar complex-associated protein, putative
nr
ID XP_012087378.1
description PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q6DRN3
description Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2 SV=1
trembl
ID A0A067JYL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22625 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nucleolar complex protein 3 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28779: 159467-159826 , PASA_asmbl_28780: 160350-161509 , PASA_asmbl_28781: 160764-162154 , PASA_asmbl_28782: 162217-166408
cDNA
(Sanger)
(ID:Location)		 042_M17.ab1: 160350-161257 , 043_F02.ab1: 160350-161287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_220 0.0 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
2 Hb_000934_210 0.0504158595 - - suppressor of ty, putative [Ricinus communis]
3 Hb_005402_040 0.0511046361 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
4 Hb_001341_180 0.0589304675 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
5 Hb_002805_210 0.0633398177 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_002350_010 0.0650129458 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
7 Hb_005832_010 0.0668326505 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
8 Hb_005542_140 0.0675182713 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
9 Hb_002217_430 0.0676328102 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
10 Hb_001673_050 0.0685848546 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
11 Hb_000025_710 0.0686425775 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
12 Hb_123531_010 0.0707381478 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
13 Hb_012244_020 0.0714202601 - - calpain, putative [Ricinus communis]
14 Hb_001789_040 0.0725249803 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
15 Hb_011174_020 0.072886933 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
16 Hb_012055_110 0.0729335207 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
17 Hb_002097_050 0.0732970609 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
18 Hb_001668_010 0.0733572206 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
19 Hb_002357_070 0.0752771756 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
20 Hb_000795_040 0.0761053553 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_220 Hb_027472_220 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_002350_010 Hb_002350_010 Hb_027472_220--Hb_002350_010 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_011202_020 Hb_011202_020 Hb_005402_040--Hb_011202_020 Hb_005357_260 Hb_005357_260 Hb_005402_040--Hb_005357_260 Hb_003124_160 Hb_003124_160 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_004048_120 Hb_004048_120 Hb_001341_180--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_001341_180--Hb_003280_020 Hb_001341_180--Hb_005402_040 Hb_002639_080 Hb_002639_080 Hb_001341_180--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_001341_180--Hb_000261_480 Hb_011174_020 Hb_011174_020 Hb_002805_210--Hb_011174_020 Hb_002805_210--Hb_012244_020 Hb_002805_210--Hb_000934_210 Hb_001157_160 Hb_001157_160 Hb_002805_210--Hb_001157_160 Hb_002805_210--Hb_123531_010 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.359 12.2777 7.57923 6.75595 9.45387 7.93935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28068 5.05898 4.36894 12.1881 11.5982

CAGE analysis