Hb_002350_010

Information

Type -
Description -
Location Contig2350: 18242-40593
Sequence    

Annotation

kegg
ID rcu:RCOM_1440440
description DNA-directed RNA polymerase III largest subunit, putative
nr
ID XP_012064930.1
description PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
swissprot
ID O14802
description DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2
trembl
ID B9T0Q9
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1440440 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase iii subunit rpc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24621: 20522-26939 , PASA_asmbl_24622: 25605-25968 , PASA_asmbl_24623: 27043-29312 , PASA_asmbl_24624: 30134-32694 , PASA_asmbl_24625: 33317-35120 , PASA_asmbl_24626: 35521-36914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002350_010 0.0 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
2 Hb_001191_120 0.0527834523 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
3 Hb_027472_220 0.0650129458 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]
4 Hb_000671_070 0.0699514047 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
5 Hb_000025_710 0.0700866628 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
6 Hb_000473_110 0.0722571187 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
7 Hb_000563_130 0.0732235597 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
8 Hb_005402_040 0.073309569 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
9 Hb_000243_210 0.074427865 - - protein with unknown function [Ricinus communis]
10 Hb_000083_070 0.0756197034 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
11 Hb_000579_010 0.0756976217 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
12 Hb_000377_050 0.0775141596 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
13 Hb_000795_040 0.0776708446 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
14 Hb_000441_120 0.077841528 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001244_150 0.0782359676 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
16 Hb_000099_040 0.0784003056 - - unnamed protein product [Coffea canephora]
17 Hb_001789_040 0.078676628 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
18 Hb_002217_430 0.0806599527 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
19 Hb_004976_010 0.0807735828 - - hypothetical protein RCOM_1429110 [Ricinus communis]
20 Hb_000176_100 0.0811836658 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_002350_010 Hb_002350_010 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_000025_710 Hb_000025_710 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_001191_120--Hb_000025_710 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_000934_210 Hb_000934_210 Hb_027472_220--Hb_000934_210 Hb_005402_040 Hb_005402_040 Hb_027472_220--Hb_005402_040 Hb_001341_180 Hb_001341_180 Hb_027472_220--Hb_001341_180 Hb_002805_210 Hb_002805_210 Hb_027472_220--Hb_002805_210 Hb_005832_010 Hb_005832_010 Hb_027472_220--Hb_005832_010 Hb_000671_070--Hb_000025_320 Hb_000671_070--Hb_000243_210 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_000025_710--Hb_005402_040 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_004079_060 Hb_004079_060 Hb_000473_110--Hb_004079_060 Hb_000473_110--Hb_006420_040 Hb_000441_120 Hb_000441_120 Hb_000473_110--Hb_000441_120 Hb_001814_030 Hb_001814_030 Hb_000473_110--Hb_001814_030 Hb_000731_270 Hb_000731_270 Hb_000473_110--Hb_000731_270 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78742 7.11996 4.86059 2.92976 6.27107 5.19028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54981 3.73172 3.02181 5.6404 6.80513

CAGE analysis