Hb_001951_170

Information

Type -
Description -
Location Contig1951: 133277-144889
Sequence    

Annotation

kegg
ID rcu:RCOM_0634380
description hypothetical protein
nr
ID XP_012091905.1
description PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21676 PE=4 SV=1
Gene Ontology
ID GO:0005515
description kinase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19491: 133337-144643 , PASA_asmbl_19492: 133337-144643 , PASA_asmbl_19493: 133603-140040 , PASA_asmbl_19494: 133633-140040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_170 0.0 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
2 Hb_003216_090 0.051403809 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
3 Hb_005832_010 0.0545175932 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
4 Hb_006031_010 0.0563394493 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
5 Hb_006531_020 0.0568318404 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
6 Hb_002007_110 0.0595736604 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
7 Hb_000331_580 0.0595779754 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
8 Hb_004223_160 0.0601392183 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
9 Hb_005408_030 0.0610621851 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
10 Hb_000665_230 0.0620015735 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
11 Hb_000934_210 0.0620135896 - - suppressor of ty, putative [Ricinus communis]
12 Hb_009486_170 0.0629992121 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
13 Hb_001699_280 0.0652438394 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
14 Hb_123531_010 0.0664266402 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
15 Hb_003939_060 0.066859343 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001167_050 0.0676198759 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
17 Hb_001904_030 0.0676771858 - - PREDICTED: importin-5 [Jatropha curcas]
18 Hb_003604_050 0.0678003566 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
19 Hb_001124_050 0.0680877055 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
20 Hb_000003_100 0.0689678069 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_170 Hb_001951_170 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_000003_100 Hb_000003_100 Hb_003216_090--Hb_000003_100 Hb_003216_090--Hb_000331_580 Hb_000003_410 Hb_000003_410 Hb_003216_090--Hb_000003_410 Hb_000665_230 Hb_000665_230 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_005832_010--Hb_004223_160 Hb_009476_090 Hb_009476_090 Hb_005832_010--Hb_009476_090 Hb_005832_010--Hb_002007_110 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_009486_090 Hb_009486_090 Hb_006031_010--Hb_009486_090 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_001377_100 Hb_001377_100 Hb_006031_010--Hb_001377_100 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_006531_020--Hb_123531_010 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_123531_010 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_000331_580--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3272 29.7506 11.8731 14.3108 11.5794 14.8355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.01462 7.5876 9.46512 20.5126 20.5949

CAGE analysis